Gene Page: BSN

Summary
GeneID  8927
Symbol  BSN
Synonyms  ZNF231
Description  bassoon (presynaptic cytomatrix protein)
See related  HGNC:1117|MIM:604020|Ensembl:ENSG00000164061|HPRD:04933|
Locus tag  -
Gene type  protein-coding
Map location  3p21.31
 
Gene in Data Sources
Gene set name Method of gene set Evidence Info
LiteratureHigh-throughput literature-searchCo-occurance with Schizophrenia keywords: [schizophrenia, schizophrenias]Click to show detail
GO_AnnotationMapping neuro-related keywords to Gene Ontology annotationsHits with neuro-related keywords: 2 
 
General Gene Expression (microarray) ?
 
Gene Expression in Brain Regions (new)
 
Top co-expressed genes in Brain Regions (new)
GenePearson's Correlation Spearman's Correlation
Top 10 positively co-expressed genes
SH2B20.750.69
MARCKSL10.740.64
PCGF20.730.59
ZBTB120.730.62
SH3BP20.730.71
SF3A20.720.62
FAM110A0.720.55
PKN10.720.65
TRAF40.720.66
JUP0.720.61
Top 10 negatively co-expressed genes
CCNI2-0.60-0.66
ITM2B-0.59-0.64
PLA2G4A-0.58-0.66
ME1-0.58-0.62
ANXA7-0.58-0.60
OMG-0.58-0.65
CHN1-0.57-0.66
CACNA1F-0.57-0.66
ACOT13-0.56-0.63
C5orf53-0.56-0.60
Gene Ontology
Molecular functionGO termEvidenceNeuro keywordsPubMed ID
GO:0008270zinc ion bindingIEA-
GO:0046872metal ion bindingIEA-
Biological processGO termEvidenceNeuro keywordsPubMed ID
GO:0007268synaptic transmissionTASneuron, Synap, Neurotransmitter (GO term level: 6)10329005 
Cellular componentGO termEvidenceNeuro keywordsPubMed ID
GO:0019717synaptosomeIEASynap, Brain (GO term level: 7)-
GO:0045202synapseIEAneuron, Synap, Neurotransmitter, Glial (GO term level: 2)-
GO:0005856cytoskeletonIEA-
GO:0005634nucleusTAS9806829 
GO:0005737cytoplasmIEA-
GO:0030054cell junctionIEA-
 
InteractionsShown by Network
InteractorsAliases BOfficial full name BExperimentalSourcePubMed ID
ERC2CAST | CAST1 | ELKSL | KIAA0378 | MGC133063 | MGC133064 | SPBC110 | Spc110ELKS/RAB6-interacting/CAST family member 2-HPRD,BioGRID14734538 
RAB3A-RAB3A, member RAS oncogene familyAffinity Capture-WesternBioGRID14734538 
RIMS1CORD7 | KIAA0340 | MGC167823 | MGC176677 | RAB3IP2 | RIM | RIM1regulating synaptic membrane exocytosis 1Affinity Capture-WesternBioGRID14734538 
UNC13AKIAA1032 | Munc13-1unc-13 homolog A (C. elegans)Affinity Capture-WesternBioGRID14734538 
 
Pathway annotation
Pathway namePathway size# SZGR genes in pathwayInfo
STARK_PREFRONTAL_CORTEX_22Q11_DELETION_UP 195138All SZGR genes in this pathway
STARK_HYPPOCAMPUS_22Q11_DELETION_UP 5340All SZGR genes in this pathway
STARK_BRAIN_22Q11_DELETION 1310All SZGR genes in this pathway
BLALOCK_ALZHEIMERS_DISEASE_DN 1237837All SZGR genes in this pathway
IVANOVA_HEMATOPOIESIS_STEM_CELL_AND_PROGENITOR 681420All SZGR genes in this pathway
LEIN_LOCALIZED_TO_PROXIMAL_DENDRITES 3726All SZGR genes in this pathway
YOSHIMURA_MAPK8_TARGETS_UP 1305895All SZGR genes in this pathway
MEISSNER_NPC_HCP_WITH_H3K4ME2 491319All SZGR genes in this pathway
MIKKELSEN_MCV6_HCP_WITH_H3K27ME3 435318All SZGR genes in this pathway
MIKKELSEN_MEF_HCP_WITH_H3K27ME3 590403All SZGR genes in this pathway
KIM_ALL_DISORDERS_OLIGODENDROCYTE_NUMBER_CORR_UP 756494All SZGR genes in this pathway
miRNA Targets ?
miRNA familyTarget positionmiRNA IDmiRNA seq
UTR startUTR endMatch method
miR-1/2065275341A,m8hsa-miR-1UGGAAUGUAAAGAAGUAUGUA
hsa-miR-206SZUGGAAUGUAAGGAAGUGUGUGG
hsa-miR-613AGGAAUGUUCCUUCUUUGCC
miR-124.18718771Ahsa-miR-124aUUAAGGCACGCGGUGAAUGCCA
miR-125/35124912497m8hsa-miR-125bbrainUCCCUGAGACCCUAACUUGUGA
hsa-miR-125abrainUCCCUGAGACCCUUUAACCUGUG
miR-132/212138713931Ahsa-miR-212SZUAACAGUCUCCAGUCACGGCC
hsa-miR-132brainUAACAGUCUACAGCCAUGGUCG
miR-13511601166m8hsa-miR-135aUAUGGCUUUUUAUUCCUAUGUGA
hsa-miR-135bUAUGGCUUUUCAUUCCUAUGUG
miR-137105810651A,m8hsa-miR-137UAUUGCUUAAGAAUACGCGUAG
miR-14313421348m8hsa-miR-143brainUGAGAUGAAGCACUGUAGCUCA
miR-14514511457m8hsa-miR-145GUCCAGUUUUCCCAGGAAUCCCUU
miR-1506226291A,m8hsa-miR-150UCUCCCAACCCUUGUACCAGUG
miR-153135613631A,m8hsa-miR-153UUGCAUAGUCACAAAAGUGA
miR-1916191625m8hsa-miR-19aUGUGCAAAUCUAUGCAAAACUGA
hsa-miR-19bUGUGCAAAUCCAUGCAAAACUGA
miR-218108610921Ahsa-miR-218brainUUGUGCUUGAUCUAACCAUGU
miR-24195019571A,m8hsa-miR-24SZUGGCUCAGUUCAGCAGGAACAG
miR-25/32/92/363/36739113917m8hsa-miR-25brainCAUUGCACUUGUCUCGGUCUGA
hsa-miR-32UAUUGCACAUUACUAAGUUGC
hsa-miR-92UAUUGCACUUGUCCCGGCCUG
hsa-miR-367AAUUGCACUUUAGCAAUGGUGA
hsa-miR-92bSZUAUUGCACUCGUCCCGGCCUC
miR-30-5p389739031Ahsa-miR-30a-5pUGUAAACAUCCUCGACUGGAAG
hsa-miR-30cbrainUGUAAACAUCCUACACUCUCAGC
hsa-miR-30dSZUGUAAACAUCCCCGACUGGAAG
hsa-miR-30bSZUGUAAACAUCCUACACUCAGCU
hsa-miR-30e-5pUGUAAACAUCCUUGACUGGA
hsa-miR-30a-5pUGUAAACAUCCUCGACUGGAAG
hsa-miR-30cbrainUGUAAACAUCCUACACUCUCAGC
hsa-miR-30dSZUGUAAACAUCCCCGACUGGAAG
hsa-miR-30bSZUGUAAACAUCCUACACUCAGCU
hsa-miR-30e-5pUGUAAACAUCCUUGACUGGA
miR-3304864921Ahsa-miR-330brainGCAAAGCACACGGCCUGCAGAGA
miR-339103710431Ahsa-miR-339UCCCUGUCCUCCAGGAGCUCA
miR-342397039761Ahsa-miR-342brainUCUCACACAGAAAUCGCACCCGUC
miR-448135713631Ahsa-miR-448UUGCAUAUGUAGGAUGUCCCAU
miR-50315591565m8hsa-miR-503UAGCAGCGGGAACAGUUCUGCAG
miR-539248724941A,m8hsa-miR-539GGAGAAAUUAUCCUUGGUGUGU
miR-91311371Ahsa-miR-9SZUCUUUGGUUAUCUAGCUGUAUGA
  • SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
  • Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.


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