Gene set: GSMA_I

     Gene set description
  • Gene set name: GSMA_I
  • Method: genome scan meta-analysis
  • Number of genes: 2155
  • Reference: Lewis et al. (2003) Genome Scan Meta-Analysis of Schizophrenia and Bipolar Disorder, Part II: Schizophrenia. The American Journal of Human Genetics 73(1): 34 - 48 PubMed
  • Gene set summary: The GSMA_I gene set includes 2158 genes from 12 bins having both PAvgRnk and Pord <0.05 in Lewis et al. (2003) genome scan meta-analysis.
     Gene List

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Gene ID Symbol Official Full Name Start Site End Site Location
6331SCN5Asodium channel, voltage-gated, type V, alpha subunit38564557386661673p21
10217CTDSPLCTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like37878673380009643p21.3
9941ENDOGL1endonuclease G-like 138512837385411833p21.3
3680ITGA9integrin, alpha 937468817378362853p21.3
4292MLH1mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)37009983370673413p21.3
9390SLC22A13solute carrier family 22 (organic anion transporter), member 1338282335382948103p21.3
9389SLC22A14solute carrier family 22, member 1438322449383348633p21.3
50853VILLvillin-like38010082380236803p21.3
8320EOMESeomesodermin homolog (Xenopus laevis)27732872277387893p21.3-p21.2
2720GLB1galactosidase, beta 133013104331136983p21.33
93ACVR2Bactivin A receptor, type IIB38470794385096373p22
4615MYD88myeloid differentiation primary response gene (88)38155009381595173p22
9497SLC4A7solute carrier family 4, sodium bicarbonate cotransporter, member 727389218274732493p22
7048TGFBR2transforming growth factor, beta receptor II (70/80kDa)30622998307106383p22
6336SCN10Asodium channel, voltage-gated, type X, alpha subunit38713841388105053p22-p21
9940DLEC1deleted in lung and esophageal cancer 138055700381392323p22-p21.3
2803GOLGA4golgi autoantigen, golgin subfamily a, 437259742373832463p22-p21.3
9943OXSR1oxidative-stress responsive 138182030382719833p22-p21.3
5333PLCD1phospholipase C, delta 138023991380590683p22-p21.3
9942XYLBxylulokinase homolog (H. influenzae)38363244384314713p22-p21.3
9852EPM2AIP1EPM2A (laforin) interacting protein 137004233370097993p22.1
339883C3orf35chromosome 3 open reading frame 3537415972374519923p22.2
85443DCLK3doublecortin-like kinase 336728917367563563p22.2
9881LBA1lupus brain antigen 136843315368774153p22.2
9209LRRFIP2leucine rich repeat (in FLII) interacting protein 237069502371910863p22.2
10777ARPP-21cyclic AMP-regulated phosphoprotein, 21 kD35658853358109923p22.3
23122CLASP2cytoplasmic linker associated protein 233512741337348523p22.3
54918CMTM6CKLF-like MARVEL transmembrane domain containing 632497808325194073p22.3
112616CMTM7CKLF-like MARVEL transmembrane domain containing 732408167324713373p22.3
152189CMTM8CKLF-like MARVEL transmembrane domain containing 832255175323868173p22.3
25904CNOT10CCR4-NOT transcription complex, subunit 1032701702327903583p22.3
10491CRTAPcartilage associated protein33130483331642693p22.3
51143DYNC1LI1dynein, cytoplasmic 1, light intermediate chain 132542470325873463p22.3
25827FBXL2F-box and leucine-rich repeat protein 233293938334031293p22.3
643853FLJ45032similar to F40B5.2b33106921331132973p22.3
23171GPD1Lglycerol-3-phosphate dehydrogenase 1-like32123148321852053p22.3
114884OSBPL10oxysterol binding protein-like 1031677321319982423p22.3
10015PDCD6IPprogrammed cell death 6 interacting protein33814561338861983p22.3
6769STACSH3 and cysteine rich domain36397101365645003p22.3
26032SUSD5sushi domain containing 533166541332357113p22.3
131405TRIM71tripartite motif-containing 7132834514329087753p22.3
7342UBP1upstream binding protein 1 (LBP-1a)33404835334568743p22.3
6304SATB1SATB homeobox 118364438184403443p23
201595STT3BSTT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)31549495316525603p23
30ACAA1acetyl-Coenzyme A acyltransferase 138139211381536193p23-p22
23473CAPN7calpain 715222737152694273p24
1233CCR4chemokine (C-C motif) receptor 432968070329714073p24
116135LRRC3Bleucine rich repeat containing 3B26639304267272713p24
5915RARBretinoic acid receptor, beta25444758256144243p24
7155TOP2Btopoisomerase (DNA) II beta 180kDa25614479256807923p24
5868RAB5ARAB5A, member RAS oncogene family19963760200016473p24-p22
80852GRIP2glutamate receptor interacting protein 214510177145585923p24-p23
27303RBMS3RNA binding motif, single stranded interacting protein29297947300216243p24-p23
64343AZI25-azacytidine induced 228339090283655793p24.1
152110NEK10NIMA (never in mitosis gene a)- related kinase 1027127398273079883p24.1
152098ZCWPW2zinc finger, CW type with PWWP domain 228406993285416373p24.1
339896GADL1glutamate decarboxylase-like 130742696308673413p24.1-p23
55768NGLY1N-glycanase 125735779257999263p24.2
28512NKIRAS1NFKB inhibitor interacting Ras-like 123908576239335413p24.2
9975NR1D2nuclear receptor subfamily 1, group D, member 223961810239962413p24.2
54995OXSM3-oxoacyl-ACP synthase, mitochondrial25806575258110293p24.2
6138RPL15ribosomal protein L1523933643239373383p24.2
7068THRBthyroid hormone receptor, beta (erythroblastic leukemia viral (v-erb-a) oncogene homolog 2, avian)24134709245113173p24.2
7324UBE2E1ubiquitin-conjugating enzyme E2E 1 (UBC4/5 homolog, yeast)23822443239078113p24.2
7325UBE2E2ubiquitin-conjugating enzyme E2E 2 (UBC4/5 homolog, yeast)23219812236070743p24.2
23243ANKRD28ankyrin repeat domain 2815683747158760573p24.3
1618DAZLdeleted in azoospermia-like16603303166220103p24.3
285381DPH3DPH3, KTI11 homolog (S. cerevisiae)16276969162814903p24.3
85403EAF1ELL associated factor 115444068154591243p24.3
151651EFHBEF-hand domain family, member B19895968199507103p24.3
152273FGD5FYVE, RhoGEF and PH domain containing 514835810149508993p24.3
117248GALNTL2UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 216191160162451663p24.3
26061HACL12-hydroxyacyl-CoA lyase 115577243156181343p24.3
131096KCNH8potassium voltage-gated channel, subfamily H (eag-related), member 819165021195521393p24.3
131965METTL6methyltransferase like 615426381154440463p24.3
23228PLCL2phospholipase C-like 216949586171070893p24.3
23180RFTN1raftlin, lipid raft linker 116332356165302263p24.3
151648SGOL1shugoshin-like 1 (S. pombe)20177087202026873p24.3
9467SH3BP5SH3-domain binding protein 5 (BTK-associated)15271361153579053p24.3
9779TBC1D5TBC1 domain family, member 517639087177594063p24.3
64145ZFYVE20zinc finger, FYVE domain containing 2015086584151156593p24.3
686BTDbiotinidase15618259156623293p25
8292COLQcollagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase15466644155382623p25
3269HRH1histamine receptor H111153779112799393p25
23609MKRN2makorin ring finger protein 212573594126002123p25
64432MRPS25mitochondrial ribosomal protein S2515065023150818203p25
7182NR2C2nuclear receptor subfamily 2, group C, member 214964240150657843p25
5468PPARGperoxisome proliferator-activated receptor gamma12304349124508553p25
5894RAF1v-raf-1 murine leukemia viral oncogene homolog 112600108126806783p25
6854SYN2synapsin II12020862122085323p25
7079TIMP4TIMP metallopeptidase inhibitor 412169568121756473p25
7476WNT7Awingless-type MMTV integration site family, member 7A13835083138966193p25
7508XPCxeroderma pigmentosum, complementation group C14161648141951433p25
92106OXNAD1oxidoreductase NAD-binding domain containing 116281718163225983p25-p24
6161RPL32ribosomal protein L3212851444128580813p25-p24
6529SLC6A1solute carrier family 6 (neurotransmitter transporter, GABA), member 111009453110559353p25-p24
6533SLC6A6solute carrier family 6 (neurotransmitter transporter, taurine), member 614419110145058613p25-p24
51244C3orf19chromosome 3 open reading frame 1914668257146891703p25.1
23066CAND2cullin-associated and neddylation-dissociated 2 (putative)12813171128513013p25.1
131474CHCHD4coiled-coil-helix-coiled-coil-helix domain containing 414128578141413723p25.1

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