DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
AMTST
Uniprot ID:
Q9H987
Source protein:
Synaptopodin 2-like protein
Source gene:
SYNPO2L
Class:
DEG_SPOP_SBC_1
Location:
575:579
E3 ligase:
SPOP
DEGRON score:
0.9382
ASA_SCORE:
79.1
COIL:
0.8144
CONS_SCORE:
0.4482
DSS_SCORE:
0.5827
HELIX:
0.1518
FCONS_SCORE:
0.9133
RIG_SCORE:
0.6691
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S585Y
TCGA-AA-A010
COAD
TCGA
AMTST
DEG_SPOP_SBC_1
0.1667
p.A586V
TCGA-AA-A02R
COAD
TCGA
AMTST
DEG_SPOP_SBC_1
0.1389
p.A586V
DO217822
GACA
ICGC
AMTST
DEG_SPOP_SBC_1
0.1389
p.S578F
TCGA-CG-4460
STAD
TCGA
AMTST
DEG_SPOP_SBC_1
0.7982
p.S578F
DO38427
STAD
ICGC
AMTST
DEG_SPOP_SBC_1
0.7982
p.A575V
DO225388
BRCA
ICGC
AMTST
DEG_SPOP_SBC_1
0.5825
p.A575D
DO228976
LICA
ICGC
AMTST
DEG_SPOP_SBC_1
0.7793
p.S578T
DO228419
MALY
ICGC
AMTST
DEG_SPOP_SBC_1
0.6005
p.P567S
SIDM00509
Small Cell Lung Carcinoma
GDSC
AMTST
DEG_SPOP_SBC_1
0.1111
p.P571H
SIDM00683
Prostate Carcinoma
GDSC
AMTST
DEG_SPOP_SBC_1
0.2222
p.P571H
ACH-000977
lymph_node
CCLE
AMTST
DEG_SPOP_SBC_1
0.2222
p.P571H
LNCaP-Clone-FGC
prostate
COSMIC
AMTST
DEG_SPOP_SBC_1
0.2222
p.S581Y
SIDM01588
Endometrial Carcinoma
GDSC
AMTST
DEG_SPOP_SBC_1
0.2778
p.S581Y
ACH-000993
Endometrial/Uterine Cancer
CCLE
AMTST
DEG_SPOP_SBC_1
0.2778
p.P573H
CTV-1
haematopoietic_and_lymphoid_tissue
COSMIC
AMTST
DEG_SPOP_SBC_1
0.2778
Drug responses associated with SYNPO2L mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of AMTST
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q02505
Mucin-3A
DEG_SPOP_SBC_1
1380:1384
AMTST
SPOP
0.6573
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
3003:3007
AMTST
SPOP
0.95
More...
Q9H987
Synaptopodin 2-like protein
DEG_SPOP_SBC_1
575:579
AMTST
SPOP
0.9382
More...
Q9NP60
X-linked interleukin-1 receptor accessory protein-like 2
DEG_SPOP_SBC_1
588:592
AMTST
SPOP
0.5216
More...
Q9UGU0
Transcription factor 20
DEG_SPOP_SBC_1
1463:1467
AMTST
SPOP
0.5189
More...