DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LKENG
Uniprot ID:
Q6PKG0
Source protein:
La-related protein 1
Source gene:
LARP1
Class:
DEG_APCC_KENBOX_2
Location:
880:884
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.835
ASA_SCORE:
81.84
COIL:
0.6538
CONS_SCORE:
0.5185
DSS_SCORE:
0.4262
HELIX:
0.3484
FCONS_SCORE:
1.0082
RIG_SCORE:
0.7009
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R879Q
TCGA-AY-5543
COAD
TCGA
LKENG
DEG_APCC_KENBOX_2
0.3056
p.R879Q
DO9748
COAD
ICGC
LKENG
DEG_APCC_KENBOX_2
0.3056
p.R879Q
SIDM00534
Colorectal Carcinoma
GDSC
LKENG
DEG_APCC_KENBOX_2
0.3056
p.R879Q
ACH-000986
Colon/Colorectal Cancer
CCLE
LKENG
DEG_APCC_KENBOX_2
0.3056
p.R879Q
HT-115
large_intestine
COSMIC
LKENG
DEG_APCC_KENBOX_2
0.3056
p.F894L
TCGA-Q1-A73O
CESC
TCGA
LKENG
DEG_APCC_KENBOX_2
0.0556
p.F894L
DO51612
CESC
ICGC
LKENG
DEG_APCC_KENBOX_2
0.0556
p.K887N
DO48442
BLCA
ICGC
LKENG
DEG_APCC_KENBOX_2
0.25
p.Y880N
DO234462
ESAD
ICGC
LKENG
DEG_APCC_KENBOX_2
0.7059
p.G884V
DO228948
LICA
ICGC
LKENG
DEG_APCC_KENBOX_2
0.6421
p.G884V
DO229028
LICA
ICGC
LKENG
DEG_APCC_KENBOX_2
0.6421
p.Y881C
DO228974
LICA
ICGC
LKENG
DEG_APCC_KENBOX_2
0.7087
p.Y870F
SIDM01176
B-Lymphoblastic Leukemia
GDSC
LKENG
DEG_APCC_KENBOX_2
0.0556
p.Y870F
ACH-000059
Leukemia
CCLE
LKENG
DEG_APCC_KENBOX_2
0.0556
p.Y870F
SUP-B15
haematopoietic_and_lymphoid_tissue
COSMIC
LKENG
DEG_APCC_KENBOX_2
0.0556
Drug responses associated with LARP1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LKENG
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q659C4
La-related protein 1B
DEG_APCC_KENBOX_2
702:706
LKENG
APC,CDC20,FZR1
0.5766
More...
Q6PKG0
La-related protein 1
DEG_APCC_KENBOX_2
880:884
LKENG
APC,CDC20,FZR1
0.835
More...
Q8N1G1
RNA exonuclease 1 homolog
DEG_APCC_KENBOX_2
939:943
LKENG
APC,CDC20,FZR1
0.7159
More...
Q8WZ42
Titin
DEG_APCC_KENBOX_2
33685:33689
LKENG
APC,CDC20,FZR1
0.5202
More...
Q70EK8
Inactive ubiquitin carboxyl-terminal hydrolase 53
DEG_APCC_KENBOX_2
391:395
LKENG
APC,CDC20,FZR1
0.8999
More...
Q8IX06
Putative exonuclease GOR
DEG_APCC_KENBOX_2
380:384
LKENG
APC,CDC20,FZR1
0.667
More...