DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
LKENG
Uniprot ID:
Q70EK8
Source protein:
Inactive ubiquitin carboxyl-terminal hydrolase 53
Source gene:
USP53
Class:
DEG_APCC_KENBOX_2
Location:
391:395
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.8999
ASA_SCORE:
95.68
COIL:
0.7998
CONS_SCORE:
0.4127
DSS_SCORE:
0.5967
HELIX:
0.1744
FCONS_SCORE:
1.043
RIG_SCORE:
0.6758
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.D398H
TCGA-13-1498
OV
TCGA
LKENG
DEG_APCC_KENBOX_2
0.25
p.D398H
DO30180
OV
ICGC
LKENG
DEG_APCC_KENBOX_2
0.25
p.G395R
TCGA-BR-4362
STAD
TCGA
LKENG
DEG_APCC_KENBOX_2
0.6457
p.G395R
DO38336
STAD
ICGC
LKENG
DEG_APCC_KENBOX_2
0.6457
p.V384I
TCGA-UZ-A9PS
KIRP
TCGA
LKENG
DEG_APCC_KENBOX_2
0.1389
p.V384I
DO219709
KIRP
ICGC
LKENG
DEG_APCC_KENBOX_2
0.1389
p.Q399H
DO229027
LICA
ICGC
LKENG
DEG_APCC_KENBOX_2
0.2222
p.A400S
DO229037
LICA
ICGC
LKENG
DEG_APCC_KENBOX_2
0.1944
Drug responses associated with USP53 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LKENG
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q659C4
La-related protein 1B
DEG_APCC_KENBOX_2
702:706
LKENG
APC,CDC20,FZR1
0.5766
More...
Q6PKG0
La-related protein 1
DEG_APCC_KENBOX_2
880:884
LKENG
APC,CDC20,FZR1
0.835
More...
Q8N1G1
RNA exonuclease 1 homolog
DEG_APCC_KENBOX_2
939:943
LKENG
APC,CDC20,FZR1
0.7159
More...
Q8WZ42
Titin
DEG_APCC_KENBOX_2
33685:33689
LKENG
APC,CDC20,FZR1
0.5202
More...
Q70EK8
Inactive ubiquitin carboxyl-terminal hydrolase 53
DEG_APCC_KENBOX_2
391:395
LKENG
APC,CDC20,FZR1
0.8999
More...
Q8IX06
Putative exonuclease GOR
DEG_APCC_KENBOX_2
380:384
LKENG
APC,CDC20,FZR1
0.667
More...