DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
PKENP
Uniprot ID:
Q70EK8
Source protein:
Inactive ubiquitin carboxyl-terminal hydrolase 53
Source gene:
USP53
Class:
DEG_APCC_KENBOX_2
Location:
629:633
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9916
ASA_SCORE:
98.28
COIL:
0.869
CONS_SCORE:
0.4842
DSS_SCORE:
0.643
HELIX:
0.1136
FCONS_SCORE:
1.1029
RIG_SCORE:
0.6474
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.M639I
TCGA-C5-A1M7
CESC
TCGA
PKENP
DEG_APCC_KENBOX_2
0.1667
p.M639I
DO48981
CESC
ICGC
PKENP
DEG_APCC_KENBOX_2
0.1667
p.M639I
DO229038
LICA
ICGC
PKENP
DEG_APCC_KENBOX_2
0.1667
p.P633S
DO229459
SKCA
ICGC
PKENP
DEG_APCC_KENBOX_2
0.5641
p.Q635K
DO229234
THCA
ICGC
PKENP
DEG_APCC_KENBOX_2
0.2778
Drug responses associated with USP53 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PKENP
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O60423
Phospholipid-transporting ATPase IK
DEG_APCC_KENBOX_2
527:531
PKENP
APC,CDC20,FZR1
0.8774
More...
P20908
Collagen alpha-1
DEG_APCC_KENBOX_2
1696:1700
PKENP
APC,CDC20,FZR1
0.9351
More...
P78524
DENN domain-containing protein 2B
DEG_APCC_KENBOX_2
496:500
PKENP
APC,CDC20,FZR1
0.9888
More...
Q8TAT2
Fibroblast growth factor-binding protein 3
DEG_APCC_KENBOX_2
195:199
PKENP
APC,CDC20,FZR1
0.9762
More...
Q70EK8
Inactive ubiquitin carboxyl-terminal hydrolase 53
DEG_APCC_KENBOX_2
629:633
PKENP
APC,CDC20,FZR1
0.9916
More...