DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
RPAANVTPT
Uniprot ID:
A6NKT7
Source protein:
RanBP2-like and GRIP domain-containing protein 3
Source gene:
RGPD3
Class:
DEG_SIAH_1
Location:
891:899
E3 ligase:
SIAH1,SIAH2,SIAH3
DEGRON score:
0.9985
ASA_SCORE:
80.7667
COIL:
0.8719
CONS_SCORE:
0.278
DSS_SCORE:
0.4497
HELIX:
0.0593
FCONS_SCORE:
0.8571
RIG_SCORE:
0.7341
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.Y884H
TCGA-56-A62T
LUSC
TCGA
RPAANVTPT
DEG_SIAH_1
0.1389
p.Y884H
DO219144
LUSC
ICGC
RPAANVTPT
DEG_SIAH_1
0.1389
p.G901V
TCGA-AP-A1DK
UCEC
TCGA
RPAANVTPT
DEG_SIAH_1
0.2778
p.G901V
DO42033
UCEC
ICGC
RPAANVTPT
DEG_SIAH_1
0.2778
p.Y888H
TCGA-AX-A2HG
UCEC
TCGA
RPAANVTPT
DEG_SIAH_1
0.25
p.Y888H
DO41337
UCEC
ICGC
RPAANVTPT
DEG_SIAH_1
0.25
p.A894V
TCGA-B5-A0JY
UCEC
TCGA
RPAANVTPT
DEG_SIAH_1
0.6936
p.A894V
DO43041
UCEC
ICGC
RPAANVTPT
DEG_SIAH_1
0.6936
p.P882S
TCGA-B6-A0RV
BRCA
TCGA
RPAANVTPT
DEG_SIAH_1
0.0833
p.P882S
DO4167
BRCA
ICGC
RPAANVTPT
DEG_SIAH_1
0.0833
p.P898S
TCGA-EE-A182
SKCM
TCGA
RPAANVTPT
DEG_SIAH_1
0.6752
p.P898S
TCGA-HU-8608
STAD
TCGA
RPAANVTPT
DEG_SIAH_1
0.6752
p.P898S
DO37814
SKCM
ICGC
RPAANVTPT
DEG_SIAH_1
0.6752
p.P898S
DO47841
STAD
ICGC
RPAANVTPT
DEG_SIAH_1
0.6752
p.P898L
TCGA-EE-A2M5
SKCM
TCGA
RPAANVTPT
DEG_SIAH_1
0.7582
p.P898L
DO37425
SKCM
ICGC
RPAANVTPT
DEG_SIAH_1
0.7582
p.L890F
TCGA-FR-A8YC
SKCM
TCGA
RPAANVTPT
DEG_SIAH_1
0.3056
p.L890F
DO50301
SKCM
ICGC
RPAANVTPT
DEG_SIAH_1
0.3056
p.Y884C
SIDM00217
Colorectal Carcinoma
GDSC
RPAANVTPT
DEG_SIAH_1
0.1389
p.V896G
SIDM00951
T-Lymphoblastic Leukemia
GDSC
RPAANVTPT
DEG_SIAH_1
0.7532
p.V896G
ACH-002222
Leukemia
CCLE
RPAANVTPT
DEG_SIAH_1
0.7532
p.V896G
CTV-1
haematopoietic_and_lymphoid_tissue
COSMIC
RPAANVTPT
DEG_SIAH_1
0.7532
p.V890G
CTV-1
haematopoietic_and_lymphoid_tissue
COSMIC
RPAANVTPT
DEG_SIAH_1
0.3056
p.S886Y
NCI-H1688
lung
COSMIC
RPAANVTPT
DEG_SIAH_1
0.1944
Drug responses associated with RGPD3 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of RPAANVTPT
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P49792
E3 SUMO-protein ligase RanBP2
DEG_SIAH_1
890:898
RPAANVTPT
SIAH1,SIAH2,SIAH3
0.9981
More...
Q99666
RANBP2-like and GRIP domain-containing protein 5/6
DEG_SIAH_1
890:898
RPAANVTPT
SIAH1,SIAH2,SIAH3
0.9902
More...
A6NKT7
RanBP2-like and GRIP domain-containing protein 3
DEG_SIAH_1
891:899
RPAANVTPT
SIAH1,SIAH2,SIAH3
0.9985
More...
O14715
RANBP2-like and GRIP domain-containing protein 8
DEG_SIAH_1
890:898
RPAANVTPT
SIAH1,SIAH2,SIAH3
0.9902
More...
P0DJD0
RANBP2-like and GRIP domain-containing protein 1
DEG_SIAH_1
875:883
RPAANVTPT
SIAH1,SIAH2,SIAH3
0.9983
More...
P0DJD1
RANBP2-like and GRIP domain-containing protein 2
DEG_SIAH_1
883:891
RPAANVTPT
SIAH1,SIAH2,SIAH3
0.9973
More...
Q7Z3J3
RanBP2-like and GRIP domain-containing protein 4
DEG_SIAH_1
891:899
RPAANVTPT
SIAH1,SIAH2,SIAH3
0.9992
More...