DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
SKENK
Uniprot ID:
Q5VT06
Source protein:
Centrosome-associated protein 350
Source gene:
CEP350
Class:
DEG_APCC_KENBOX_2
Location:
2663:2667
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.913
ASA_SCORE:
104.42
COIL:
0.63
CONS_SCORE:
0.3563
DSS_SCORE:
0.5079
HELIX:
0.3402
FCONS_SCORE:
0.9817
RIG_SCORE:
0.6852
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S2662P
TCGA-60-2703
LUSC
TCGA
SKENK
DEG_APCC_KENBOX_2
0.3056
p.S2662P
DO27715
LUSC
ICGC
SKENK
DEG_APCC_KENBOX_2
0.3056
p.S2671F
TCGA-BS-A0UV
UCEC
TCGA
SKENK
DEG_APCC_KENBOX_2
0.6667
p.S2671F
DO218863
SKCA
ICGC
SKENK
DEG_APCC_KENBOX_2
0.6667
p.S2671F
DO42793
UCEC
ICGC
SKENK
DEG_APCC_KENBOX_2
0.6667
p.K2667E
TCGA-CA-6717
COAD
TCGA
SKENK
DEG_APCC_KENBOX_2
0.591
p.K2667E
DO8264
COAD
ICGC
SKENK
DEG_APCC_KENBOX_2
0.591
p.S2662Y
TCGA-E6-A1M0
UCEC
TCGA
SKENK
DEG_APCC_KENBOX_2
0.3056
p.S2662Y
DO43682
UCEC
ICGC
SKENK
DEG_APCC_KENBOX_2
0.3056
p.I2670V
SIDM01199
Hepatocellular Carcinoma
GDSC
SKENK
DEG_APCC_KENBOX_2
0.25
p.I2670V
SIDM01756
Chronic Myelogenous Leukemia
GDSC
SKENK
DEG_APCC_KENBOX_2
0.25
p.S2659L
SIDM00789
Colorectal Carcinoma
GDSC
SKENK
DEG_APCC_KENBOX_2
0.2222
p.S2659L
ACH-000997
Colon/Colorectal Cancer
CCLE
SKENK
DEG_APCC_KENBOX_2
0.2222
p.S2659L
HCT-15
large_intestine
COSMIC
SKENK
DEG_APCC_KENBOX_2
0.2222
p.E2665G
SIDM00160
Biliary Tract Carcinoma
GDSC
SKENK
DEG_APCC_KENBOX_2
0.7199
p.T2674I
ACH-000954
Endometrial/Uterine Cancer
CCLE
SKENK
DEG_APCC_KENBOX_2
0.1389
Drug responses associated with CEP350 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of SKENK
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P07947
Tyrosine-protein kinase Yes
DEG_APCC_KENBOX_2
6:10
SKENK
APC,CDC20,FZR1
0.999
More...
Q5VT06
Centrosome-associated protein 350
DEG_APCC_KENBOX_2
2663:2667
SKENK
APC,CDC20,FZR1
0.913
More...
Q96JM3
Chromosome alignment-maintaining phosphoprotein 1
DEG_APCC_KENBOX_2
666:670
SKENK
APC,CDC20,FZR1
0.9977
More...
Q9NPI1
Bromodomain-containing protein 7
DEG_APCC_KENBOX_2
291:295
SKENK
APC,CDC20,FZR1
0.8688
More...
Q9P2Y5
UV radiation resistance-associated gene protein
DEG_APCC_KENBOX_2
558:562
SKENK
APC,CDC20,FZR1
0.9842
More...