DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
SKENK
Uniprot ID:
Q9NPI1
Source protein:
Bromodomain-containing protein 7
Source gene:
BRD7
Class:
DEG_APCC_KENBOX_2
Location:
291:295
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.8688
ASA_SCORE:
110.92
COIL:
0.704
CONS_SCORE:
0.3551
DSS_SCORE:
0.6331
HELIX:
0.2918
FCONS_SCORE:
0.9631
RIG_SCORE:
0.5854
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.D298H
TCGA-B5-A11E
UCEC
TCGA
SKENK
DEG_APCC_KENBOX_2
0.25
p.D298H
DO41644
UCEC
ICGC
SKENK
DEG_APCC_KENBOX_2
0.25
p.P290L
TCGA-DA-A1HY
SKCM
TCGA
SKENK
DEG_APCC_KENBOX_2
0.3056
p.P290L
TCGA-FI-A2D0
UCEC
TCGA
SKENK
DEG_APCC_KENBOX_2
0.3056
p.P290L
DO37409
SKCM
ICGC
SKENK
DEG_APCC_KENBOX_2
0.3056
p.P290L
DO43891
UCEC
ICGC
SKENK
DEG_APCC_KENBOX_2
0.3056
p.K296N
TCGA-DD-A39Z
LIHC
TCGA
SKENK
DEG_APCC_KENBOX_2
0.3056
p.K296N
DO44954
LIHC
ICGC
SKENK
DEG_APCC_KENBOX_2
0.3056
p.A282T
TCGA-EW-A1PH
BRCA
TCGA
SKENK
DEG_APCC_KENBOX_2
0.0833
p.A282T
DO2551
BRCA
ICGC
SKENK
DEG_APCC_KENBOX_2
0.0833
p.S291N
DO50970
LICA
ICGC
SKENK
DEG_APCC_KENBOX_2
0.7069
p.A284T
SIDM00534
Colorectal Carcinoma
GDSC
SKENK
DEG_APCC_KENBOX_2
0.1389
p.A284T
ACH-000986
Colon/Colorectal Cancer
CCLE
SKENK
DEG_APCC_KENBOX_2
0.1389
p.A284T
HT-115
large_intestine
COSMIC
SKENK
DEG_APCC_KENBOX_2
0.1389
p.K299N
SIDM00205
Ewing's Sarcoma
GDSC
SKENK
DEG_APCC_KENBOX_2
0.3333
p.K299N
ACH-002110
Bone Cancer
CCLE
SKENK
DEG_APCC_KENBOX_2
0.3333
p.S289T
ACH-002287
Colon/Colorectal Cancer
CCLE
SKENK
DEG_APCC_KENBOX_2
0.7222
p.S289T
NCI-H630
large_intestine
COSMIC
SKENK
DEG_APCC_KENBOX_2
0.7222
p.N294K
ATN-1
haematopoietic_and_lymphoid_tissue
COSMIC
SKENK
DEG_APCC_KENBOX_2
0.6918
p.N294K
JIMT-1
breast
COSMIC
SKENK
DEG_APCC_KENBOX_2
0.6918
p.N294K
no-10
central_nervous_system
COSMIC
SKENK
DEG_APCC_KENBOX_2
0.6918
p.N294K
NCI-H2342
lung
COSMIC
SKENK
DEG_APCC_KENBOX_2
0.6918
p.N294K
NCI-H2196
lung
COSMIC
SKENK
DEG_APCC_KENBOX_2
0.6918
p.N294K
HT-1080
soft_tissue
COSMIC
SKENK
DEG_APCC_KENBOX_2
0.6918
p.N294K
NCI-H1048
lung
COSMIC
SKENK
DEG_APCC_KENBOX_2
0.6918
p.K295E
ATN-1
haematopoietic_and_lymphoid_tissue
COSMIC
SKENK
DEG_APCC_KENBOX_2
0.591
Drug responses associated with BRD7 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of SKENK
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P07947
Tyrosine-protein kinase Yes
DEG_APCC_KENBOX_2
6:10
SKENK
APC,CDC20,FZR1
0.999
More...
Q5VT06
Centrosome-associated protein 350
DEG_APCC_KENBOX_2
2663:2667
SKENK
APC,CDC20,FZR1
0.913
More...
Q96JM3
Chromosome alignment-maintaining phosphoprotein 1
DEG_APCC_KENBOX_2
666:670
SKENK
APC,CDC20,FZR1
0.9977
More...
Q9NPI1
Bromodomain-containing protein 7
DEG_APCC_KENBOX_2
291:295
SKENK
APC,CDC20,FZR1
0.8688
More...
Q9P2Y5
UV radiation resistance-associated gene protein
DEG_APCC_KENBOX_2
558:562
SKENK
APC,CDC20,FZR1
0.9842
More...