DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
SKENK
Uniprot ID:
Q96JM3
Source protein:
Chromosome alignment-maintaining phosphoprotein 1
Source gene:
CHAMP1
Class:
DEG_APCC_KENBOX_2
Location:
666:670
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9977
ASA_SCORE:
112.16
COIL:
0.7902
CONS_SCORE:
0.5715
DSS_SCORE:
0.6292
HELIX:
0.1852
FCONS_SCORE:
1.1063
RIG_SCORE:
0.6942
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.I663V
TCGA-34-2596
LUSC
TCGA
SKENK
DEG_APCC_KENBOX_2
0.25
p.I663V
DO26508
LUSC
ICGC
SKENK
DEG_APCC_KENBOX_2
0.25
p.D664V
TCGA-HU-A4GH
STAD
TCGA
SKENK
DEG_APCC_KENBOX_2
0.2778
p.D664V
DO47743
STAD
ICGC
SKENK
DEG_APCC_KENBOX_2
0.2778
p.D672G
TCGA-VQ-A91D
STAD
TCGA
SKENK
DEG_APCC_KENBOX_2
0.2778
p.D672G
DO51783
STAD
ICGC
SKENK
DEG_APCC_KENBOX_2
0.2778
p.E677D
DO228976
LICA
ICGC
SKENK
DEG_APCC_KENBOX_2
0.1389
p.V660L
DO229019
LICA
ICGC
SKENK
DEG_APCC_KENBOX_2
0.1667
p.R680K
DO231179
LUSC
ICGC
SKENK
DEG_APCC_KENBOX_2
0.0556
p.E668A
DO228349
MALY
ICGC
SKENK
DEG_APCC_KENBOX_2
0.7701
p.E668A
SIDM00656
Burkitt's Lymphoma
GDSC
SKENK
DEG_APCC_KENBOX_2
0.7701
p.E668A
SIDM00641
Burkitt's Lymphoma
GDSC
SKENK
DEG_APCC_KENBOX_2
0.7701
p.E668A
ACH-000944
Lymphoma
CCLE
SKENK
DEG_APCC_KENBOX_2
0.7701
p.E668A
NAMALWA
haematopoietic_and_lymphoid_tissue
COSMIC
SKENK
DEG_APCC_KENBOX_2
0.7701
p.M671I
SIDM00845
Burkitt's Lymphoma
GDSC
SKENK
DEG_APCC_KENBOX_2
0.3056
p.M671I
SIDM00254
Neuroblastoma
GDSC
SKENK
DEG_APCC_KENBOX_2
0.3056
p.T674A
NCI-H1975
lung
COSMIC
SKENK
DEG_APCC_KENBOX_2
0.2222
Drug responses associated with CHAMP1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of SKENK
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P07947
Tyrosine-protein kinase Yes
DEG_APCC_KENBOX_2
6:10
SKENK
APC,CDC20,FZR1
0.999
More...
Q5VT06
Centrosome-associated protein 350
DEG_APCC_KENBOX_2
2663:2667
SKENK
APC,CDC20,FZR1
0.913
More...
Q96JM3
Chromosome alignment-maintaining phosphoprotein 1
DEG_APCC_KENBOX_2
666:670
SKENK
APC,CDC20,FZR1
0.9977
More...
Q9NPI1
Bromodomain-containing protein 7
DEG_APCC_KENBOX_2
291:295
SKENK
APC,CDC20,FZR1
0.8688
More...
Q9P2Y5
UV radiation resistance-associated gene protein
DEG_APCC_KENBOX_2
558:562
SKENK
APC,CDC20,FZR1
0.9842
More...