DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
SKENT
Uniprot ID:
Q5UIP0
Source protein:
Telomere-associated protein RIF1
Source gene:
RIF1
Class:
DEG_APCC_KENBOX_2
Location:
1384:1388
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9973
ASA_SCORE:
119.54
COIL:
0.952
CONS_SCORE:
0.309
DSS_SCORE:
0.4796
HELIX:
0.0284
FCONS_SCORE:
1.1721
RIG_SCORE:
0.7042
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.N1387D
TCGA-23-1021
OV
TCGA
SKENT
DEG_APCC_KENBOX_2
0.6932
p.N1387D
DO32183
OV
ICGC
SKENT
DEG_APCC_KENBOX_2
0.6932
p.N1387T
TCGA-A3-3317
KIRC
TCGA
SKENT
DEG_APCC_KENBOX_2
0.7055
p.K1376N
TCGA-HE-A5NH
KIRP
TCGA
SKENT
DEG_APCC_KENBOX_2
0.2222
p.K1376N
DO44485
KIRP
ICGC
SKENT
DEG_APCC_KENBOX_2
0.2222
p.S1384Y
TCGA-NJ-A4YP
LUAD
TCGA
SKENT
DEG_APCC_KENBOX_2
0.712
p.S1384Y
DO218943
LUAD
ICGC
SKENT
DEG_APCC_KENBOX_2
0.712
p.K1385Q
DO233629
GACA
ICGC
SKENT
DEG_APCC_KENBOX_2
0.6944
p.N1381K
SIDM02040
Esophageal Carcinoma
GDSC
SKENT
DEG_APCC_KENBOX_2
0.25
p.S1394P
SIDM00589
Oral Cavity Carcinoma
GDSC
SKENT
DEG_APCC_KENBOX_2
0.6111
p.S1394P
SIDM01756
Chronic Myelogenous Leukemia
GDSC
SKENT
DEG_APCC_KENBOX_2
0.6111
p.S1394P
ACH-000076
Leukemia
CCLE
SKENT
DEG_APCC_KENBOX_2
0.6111
p.S1394P
ACH-000778
Head and Neck Cancer
CCLE
SKENT
DEG_APCC_KENBOX_2
0.6111
p.S1394P
HSC-3
upper_aerodigestive_tract
COSMIC
SKENT
DEG_APCC_KENBOX_2
0.6111
p.E1386D
SIDM01588
Endometrial Carcinoma
GDSC
SKENT
DEG_APCC_KENBOX_2
0.6758
p.E1386D
ACH-000993
Endometrial/Uterine Cancer
CCLE
SKENT
DEG_APCC_KENBOX_2
0.6758
p.P1390T
ACH-000954
Endometrial/Uterine Cancer
CCLE
SKENT
DEG_APCC_KENBOX_2
0.2778
Drug responses associated with RIF1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of SKENT
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O60861
Growth arrest-specific protein 7
DEG_APCC_KENBOX_2
169:173
SKENT
APC,CDC20,FZR1
0.8832
More...
P56715
Oxygen-regulated protein 1
DEG_APCC_KENBOX_2
1347:1351
SKENT
APC,CDC20,FZR1
0.9775
More...
Q5UIP0
Telomere-associated protein RIF1
DEG_APCC_KENBOX_2
1384:1388
SKENT
APC,CDC20,FZR1
0.9973
More...
Q5UIP0
Telomere-associated protein RIF1
DEG_APCC_KENBOX_2
1818:1822
SKENT
APC,CDC20,FZR1
0.9945
More...
Q7Z5K2
Wings apart-like protein homolog
DEG_APCC_KENBOX_2
535:539
SKENT
APC,CDC20,FZR1
0.9938
More...
Q9NXR8
Inhibitor of growth protein 3
DEG_APCC_KENBOX_2
180:184
SKENT
APC,CDC20,FZR1
0.8218
More...