DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CGC
Degron:
SKENT
Uniprot ID:
Q5UIP0
Source protein:
Telomere-associated protein RIF1
Source gene:
RIF1
Class:
DEG_APCC_KENBOX_2
Location:
1818:1822
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9945
ASA_SCORE:
105.78
COIL:
0.7754
CONS_SCORE:
0.2687
DSS_SCORE:
0.537
HELIX:
0.1966
FCONS_SCORE:
1.0504
RIG_SCORE:
0.7078
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S1814F
TCGA-AG-3892
READ
TCGA
SKENT
DEG_APCC_KENBOX_2
0.2222
p.S1814F
DO36394
READ
ICGC
SKENT
DEG_APCC_KENBOX_2
0.2222
p.S1826Y
TCGA-BS-A0TC
UCEC
TCGA
SKENT
DEG_APCC_KENBOX_2
0.6667
p.S1826Y
DO42400
UCEC
ICGC
SKENT
DEG_APCC_KENBOX_2
0.6667
p.V1832A
TCGA-DI-A1BU
UCEC
TCGA
SKENT
DEG_APCC_KENBOX_2
0.0556
p.V1832A
DO42023
UCEC
ICGC
SKENT
DEG_APCC_KENBOX_2
0.0556
p.S1810L
TCGA-FD-A3B3
BLCA
TCGA
SKENT
DEG_APCC_KENBOX_2
0.5556
p.S1810L
DO749
BLCA
ICGC
SKENT
DEG_APCC_KENBOX_2
0.5556
p.S1818L
TCGA-GN-A26C
SKCM
TCGA
SKENT
DEG_APCC_KENBOX_2
0.7667
p.S1818L
DO233733
GACA
ICGC
SKENT
DEG_APCC_KENBOX_2
0.7667
p.S1818L
DO37782
SKCM
ICGC
SKENT
DEG_APCC_KENBOX_2
0.7667
p.K1819R
TCGA-UY-A78K
BLCA
TCGA
SKENT
DEG_APCC_KENBOX_2
0.7237
p.K1819R
DO219031
BLCA
ICGC
SKENT
DEG_APCC_KENBOX_2
0.7237
p.K1819R
DO231772
LINC
ICGC
SKENT
DEG_APCC_KENBOX_2
0.7237
p.T1816I
DO233245
GACA
ICGC
SKENT
DEG_APCC_KENBOX_2
0.2778
p.V1813F
DO229028
LICA
ICGC
SKENT
DEG_APCC_KENBOX_2
0.1944
Drug responses associated with RIF1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of SKENT
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O60861
Growth arrest-specific protein 7
DEG_APCC_KENBOX_2
169:173
SKENT
APC,CDC20,FZR1
0.8832
More...
P56715
Oxygen-regulated protein 1
DEG_APCC_KENBOX_2
1347:1351
SKENT
APC,CDC20,FZR1
0.9775
More...
Q5UIP0
Telomere-associated protein RIF1
DEG_APCC_KENBOX_2
1384:1388
SKENT
APC,CDC20,FZR1
0.9973
More...
Q5UIP0
Telomere-associated protein RIF1
DEG_APCC_KENBOX_2
1818:1822
SKENT
APC,CDC20,FZR1
0.9945
More...
Q7Z5K2
Wings apart-like protein homolog
DEG_APCC_KENBOX_2
535:539
SKENT
APC,CDC20,FZR1
0.9938
More...
Q9NXR8
Inhibitor of growth protein 3
DEG_APCC_KENBOX_2
180:184
SKENT
APC,CDC20,FZR1
0.8218
More...