DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
VGTTS
Uniprot ID:
Q8TF05
Source protein:
Serine/threonine-protein phosphatase 4 regulatory subunit 1
Source gene:
PPP4R1
Class:
DEG_SPOP_SBC_1
Location:
438:442
E3 ligase:
SPOP
DEGRON score:
0.9657
ASA_SCORE:
69.2
COIL:
0.8836
CONS_SCORE:
0.3768
DSS_SCORE:
0.4941
HELIX:
0.0552
FCONS_SCORE:
1.0443
RIG_SCORE:
0.6771
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S432Y
TCGA-A5-A1OF
UCEC
TCGA
VGTTS
DEG_SPOP_SBC_1
0.1667
p.P436Q
TCGA-GN-A265
SKCM
TCGA
VGTTS
DEG_SPOP_SBC_1
0.2778
p.K431N
TCGA-IB-7651
PAAD
TCGA
VGTTS
DEG_SPOP_SBC_1
0.25
p.A429T
DO11854
GBM
ICGC
VGTTS
DEG_SPOP_SBC_1
0.0833
p.E434G
DO228338
MALY
ICGC
VGTTS
DEG_SPOP_SBC_1
0.2222
p.E434G
DG-75
haematopoietic_and_lymphoid_tissue
COSMIC
VGTTS
DEG_SPOP_SBC_1
0.2222
p.E451G
SIDM00948
Burkitt's Lymphoma
GDSC
VGTTS
DEG_SPOP_SBC_1
0.0833
p.E451G
ACH-002232
Lymphoma
CCLE
VGTTS
DEG_SPOP_SBC_1
0.0833
p.E451G
DG-75
haematopoietic_and_lymphoid_tissue
COSMIC
VGTTS
DEG_SPOP_SBC_1
0.0833
p.L446R
BT-20
breast
COSMIC
VGTTS
DEG_SPOP_SBC_1
0.2222
Drug responses associated with PPP4R1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VGTTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q02505
Mucin-3A
DEG_SPOP_SBC_1
2541:2545
VGTTS
SPOP
0.9689
More...
Q2TAL8
Transcriptional regulator QRICH1
DEG_SPOP_SBC_1
362:366
VGTTS
SPOP
0.9982
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
6306:6310
VGTTS
SPOP
0.9653
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
10107:10111
VGTTS
SPOP
0.976
More...
Q8TF05
Serine/threonine-protein phosphatase 4 regulatory subunit 1
DEG_SPOP_SBC_1
438:442
VGTTS
SPOP
0.9657
More...
Q9H195
Mucin-3B
DEG_SPOP_SBC_1
454:458
VGTTS
SPOP
0.9836
More...