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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

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Gene Page: CUGBP2

Summary

GeneID

10659

Symbol

CUGBP2

Synonyms

BRUNOL3|ETR-3|NAPOR

Description

CUG triplet repeat, RNA binding protein 2

Locus tag

Gene type

protein-coding

Map location

10p13

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

Expression

P value: 1.629

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

GFOD2

0.87

0.88

DGCR14

0.87

0.90

CARM1

0.87

0.90

CTBP1

0.87

0.89

RAB11B

0.87

0.89

RAB35

0.86

0.89

BAT3

0.86

0.89

PRCC

0.86

0.89

G6PD

0.86

0.89

C7orf26

0.86

0.90

Top 10 negatively co-expressed genes

MT-CO2

-0.77

-0.84

AF347015.31

-0.77

-0.83

MT-CYB

-0.74

-0.81

AF347015.33

-0.73

-0.80

AF347015.8

-0.73

-0.82

AF347015.27

-0.72

-0.81

AF347015.21

-0.70

-0.83

NOSTRIN

-0.70

-0.79

AF347015.2

-0.69

-0.79

AF347015.15

-0.69

-0.79

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0000166

nucleotide binding

IEA

GO:0003723

RNA binding

TAS

9887331

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0006397

mRNA processing

IEA

GO:0008016

regulation of heart contraction

TAS

9887331

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005634

nucleus

IEA

GO:0005737

cytoplasm

IEA

Interactions

Shown by Network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
A1CF	ACF \| ACF64 \| ACF65 \| APOBEC1CF \| ASP \| MGC163391 \| RP11-564C4.2	APOBEC1 complementation factor	-	HPRD,BioGRID	11577082
APOBEC1	APOBEC-1 \| BEDP \| CDAR1 \| HEPR	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	-	HPRD	11577082

Pathway annotation

Pathway name	Pathway size	# SZGR genes in pathway	Info
WINTER_HYPOXIA_DN	52	30	All SZGR genes in this pathway
LU_TUMOR_VASCULATURE_DN	13	6	All SZGR genes in this pathway
ONKEN_UVEAL_MELANOMA_UP	783	507	All SZGR genes in this pathway
SCHUETZ_BREAST_CANCER_DUCTAL_INVASIVE_UP	351	230	All SZGR genes in this pathway
TURASHVILI_BREAST_NORMAL_DUCTAL_VS_LOBULAR_UP	68	40	All SZGR genes in this pathway
THUM_SYSTOLIC_HEART_FAILURE_DN	244	147	All SZGR genes in this pathway
OSMAN_BLADDER_CANCER_DN	406	230	All SZGR genes in this pathway
SENESE_HDAC1_AND_HDAC2_TARGETS_DN	232	139	All SZGR genes in this pathway
WAMUNYOKOLI_OVARIAN_CANCER_LMP_DN	199	124	All SZGR genes in this pathway
WAMUNYOKOLI_OVARIAN_CANCER_GRADES_1_2_DN	67	43	All SZGR genes in this pathway
LINDGREN_BLADDER_CANCER_CLUSTER_2A_DN	141	84	All SZGR genes in this pathway
BERENJENO_TRANSFORMED_BY_RHOA_DN	394	258	All SZGR genes in this pathway
HAMAI_APOPTOSIS_VIA_TRAIL_UP	584	356	All SZGR genes in this pathway
PEREZ_TP53_TARGETS	1174	695	All SZGR genes in this pathway
PEREZ_TP63_TARGETS	355	243	All SZGR genes in this pathway
PEREZ_TP53_AND_TP63_TARGETS	205	145	All SZGR genes in this pathway
LINDGREN_BLADDER_CANCER_CLUSTER_2B	392	251	All SZGR genes in this pathway
DAIRKEE_TERT_TARGETS_DN	124	79	All SZGR genes in this pathway
GRUETZMANN_PANCREATIC_CANCER_UP	358	245	All SZGR genes in this pathway
JAZAG_TGFB1_SIGNALING_UP	108	69	All SZGR genes in this pathway
JAZAG_TGFB1_SIGNALING_VIA_SMAD4_UP	108	66	All SZGR genes in this pathway
SHETH_LIVER_CANCER_VS_TXNIP_LOSS_PAM4	261	153	All SZGR genes in this pathway
PASQUALUCCI_LYMPHOMA_BY_GC_STAGE_DN	165	104	All SZGR genes in this pathway
BENPORATH_NANOG_TARGETS	988	594	All SZGR genes in this pathway
KENNY_CTNNB1_TARGETS_UP	50	30	All SZGR genes in this pathway
PARK_HSC_VS_MULTIPOTENT_PROGENITORS_UP	19	14	All SZGR genes in this pathway
FLECHNER_BIOPSY_KIDNEY_TRANSPLANT_REJECTED_VS_OK_UP	87	58	All SZGR genes in this pathway
ASTON_MAJOR_DEPRESSIVE_DISORDER_UP	49	36	All SZGR genes in this pathway
MANALO_HYPOXIA_UP	207	145	All SZGR genes in this pathway
THEILGAARD_NEUTROPHIL_AT_SKIN_WOUND_DN	225	163	All SZGR genes in this pathway
REN_ALVEOLAR_RHABDOMYOSARCOMA_UP	98	64	All SZGR genes in this pathway
CUI_TCF21_TARGETS_2_DN	830	547	All SZGR genes in this pathway
MCCLUNG_COCAINE_REWARD_5D	79	62	All SZGR genes in this pathway
LINDVALL_IMMORTALIZED_BY_TERT_DN	80	56	All SZGR genes in this pathway
BROWNE_HCMV_INFECTION_48HR_DN	504	323	All SZGR genes in this pathway
RODWELL_AGING_KIDNEY_UP	487	303	All SZGR genes in this pathway
KRASNOSELSKAYA_ILF3_TARGETS_DN	46	38	All SZGR genes in this pathway
ZHENG_BOUND_BY_FOXP3	491	310	All SZGR genes in this pathway
ZHENG_FOXP3_TARGETS_IN_THYMUS_UP	196	137	All SZGR genes in this pathway
HELLER_HDAC_TARGETS_DN	292	189	All SZGR genes in this pathway
HELLER_HDAC_TARGETS_SILENCED_BY_METHYLATION_DN	281	179	All SZGR genes in this pathway
MARTINEZ_RB1_TARGETS_UP	673	430	All SZGR genes in this pathway
MARTINEZ_TP53_TARGETS_UP	602	364	All SZGR genes in this pathway
MARTINEZ_RB1_AND_TP53_TARGETS_UP	601	369	All SZGR genes in this pathway
WALLACE_PROSTATE_CANCER_RACE_UP	299	167	All SZGR genes in this pathway
SMID_BREAST_CANCER_NORMAL_LIKE_UP	476	285	All SZGR genes in this pathway
IZADPANAH_STEM_CELL_ADIPOSE_VS_BONE_DN	108	68	All SZGR genes in this pathway
BOQUEST_STEM_CELL_UP	260	174	All SZGR genes in this pathway
BOQUEST_STEM_CELL_CULTURED_VS_FRESH_UP	425	298	All SZGR genes in this pathway
WANG_TUMOR_INVASIVENESS_DN	210	128	All SZGR genes in this pathway
RUTELLA_RESPONSE_TO_CSF2RB_AND_IL4_UP	338	225	All SZGR genes in this pathway
RUTELLA_RESPONSE_TO_HGF_DN	235	144	All SZGR genes in this pathway
RUTELLA_RESPONSE_TO_HGF_VS_CSF2RB_AND_IL4_DN	245	150	All SZGR genes in this pathway
LEE_DIFFERENTIATING_T_LYMPHOCYTE	200	115	All SZGR genes in this pathway
COLINA_TARGETS_OF_4EBP1_AND_4EBP2	356	214	All SZGR genes in this pathway
MILI_PSEUDOPODIA_HAPTOTAXIS_UP	518	299	All SZGR genes in this pathway
BOYAULT_LIVER_CANCER_SUBCLASS_G5_DN	27	17	All SZGR genes in this pathway
MARSON_FOXP3_TARGETS_UP	66	43	All SZGR genes in this pathway
HOSHIDA_LIVER_CANCER_SUBCLASS_S1	237	159	All SZGR genes in this pathway
KARLSSON_TGFB1_TARGETS_DN	207	139	All SZGR genes in this pathway
MARTENS_BOUND_BY_PML_RARA_FUSION	456	287	All SZGR genes in this pathway
GREGORY_SYNTHETIC_LETHAL_WITH_IMATINIB	145	83	All SZGR genes in this pathway
PANGAS_TUMOR_SUPPRESSION_BY_SMAD1_AND_SMAD5_UP	134	85	All SZGR genes in this pathway
CHYLA_CBFA2T3_TARGETS_UP	387	225	All SZGR genes in this pathway
PILON_KLF1_TARGETS_DN	1972	1213	All SZGR genes in this pathway
LEE_BMP2_TARGETS_UP	745	475	All SZGR genes in this pathway
TORCHIA_TARGETS_OF_EWSR1_FLI1_FUSION_DN	321	200	All SZGR genes in this pathway
IKEDA_MIR30_TARGETS_UP	116	87	All SZGR genes in this pathway
PLASARI_TGFB1_TARGETS_10HR_DN	244	157	All SZGR genes in this pathway
PLASARI_TGFB1_SIGNALING_VIA_NFIC_10HR_DN	30	25	All SZGR genes in this pathway
RATTENBACHER_BOUND_BY_CELF1	467	251	All SZGR genes in this pathway

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-10	717	723	m8	hsa-miR-10a	UACCCUGUAGAUCCGAAUUUGUG
miR-10	717	723	m8	hsa-miR-10b	UACCCUGUAGAACCGAAUUUGU
miR-101	2121	2127	1A	hsa-miR-101	UACAGUACUGUGAUAACUGAAG
miR-103/107	1612	1618	1A	hsa-miR-103^brain	AGCAGCAUUGUACAGGGCUAUGA
miR-103/107	1612	1618	1A	hsa-miR-107^brain	AGCAGCAUUGUACAGGGCUAUCA
miR-129-5p	2250	2256	1A	hsa-miR-129^brain	CUUUUUGCGGUCUGGGCUUGC
				hsa-miR-129-5p	CUUUUUGCGGUCUGGGCUUGCU
				hsa-miR-129^brain	CUUUUUGCGGUCUGGGCUUGC
				hsa-miR-129-5p	CUUUUUGCGGUCUGGGCUUGCU
				hsa-miR-129^brain	CUUUUUGCGGUCUGGGCUUGC
				hsa-miR-129-5p	CUUUUUGCGGUCUGGGCUUGCU
miR-132/212	7206	7212	m8	hsa-miR-212^SZ	UAACAGUCUCCAGUCACGGCC
miR-132/212	7206	7212	m8	hsa-miR-132^brain	UAACAGUCUACAGCCAUGGUCG
miR-134	5102	5108	m8	hsa-miR-134^brain	UGUGACUGGUUGACCAGAGGG
miR-137	1769	1775	1A	hsa-miR-137	UAUUGCUUAAGAAUACGCGUAG
miR-142-3p	550	556	1A	hsa-miR-142-3p	UGUAGUGUUUCCUACUUUAUGGA
miR-144	2121	2127	1A	hsa-miR-144	UACAGUAUAGAUGAUGUACUAG
miR-144	2121	2127	1A	hsa-miR-144	UACAGUAUAGAUGAUGUACUAG
miR-145	1147	1153	m8	hsa-miR-145	GUCCAGUUUUCCCAGGAAUCCCUU
miR-146	942	948	m8	hsa-miR-146a	UGAGAACUGAAUUCCAUGGGUU
miR-146	942	948	m8	hsa-miR-146b^brain	UGAGAACUGAAUUCCAUAGGCU
miR-153	7370	7376	m8	hsa-miR-153	UUGCAUAGUCACAAAAGUGA
miR-155	5006	5012	m8	hsa-miR-155	UUAAUGCUAAUCGUGAUAGGGG
miR-17-5p/20/93.mr/106/519.d	5106	5112	1A	hsa-miR-17-5p	CAAAGUGCUUACAGUGCAGGUAGU
				hsa-miR-20a^brain	UAAAGUGCUUAUAGUGCAGGUAG
				hsa-miR-106a	AAAAGUGCUUACAGUGCAGGUAGC
				hsa-miR-106b^SZ	UAAAGUGCUGACAGUGCAGAU
				hsa-miR-20b^SZ	CAAAGUGCUCAUAGUGCAGGUAG
				hsa-miR-519d	CAAAGUGCCUCCCUUUAGAGUGU
miR-182	2442	2448	1A	hsa-miR-182	UUUGGCAAUGGUAGAACUCACA
miR-183	3480	3487	1A,m8	hsa-miR-183	UAUGGCACUGGUAGAAUUCACUG
miR-196	2014	2020	1A	hsa-miR-196a	UAGGUAGUUUCAUGUUGUUGG
miR-196	2014	2020	1A	hsa-miR-196b	UAGGUAGUUUCCUGUUGUUGG
miR-199	628	634	m8	hsa-miR-199a	CCCAGUGUUCAGACUACCUGUUC
miR-199	628	634	m8	hsa-miR-199b	CCCAGUGUUUAGACUAUCUGUUC
miR-200bc/429	1724	1730	1A	hsa-miR-200b	UAAUACUGCCUGGUAAUGAUGAC
				hsa-miR-200c	UAAUACUGCCGGGUAAUGAUGG
				hsa-miR-429	UAAUACUGUCUGGUAAAACCGU
miR-208	5020	5026	1A	hsa-miR-208	AUAAGACGAGCAAAAAGCUUGU
miR-208	5020	5026	1A	hsa-miR-208	AUAAGACGAGCAAAAAGCUUGU
miR-214	3461	3467	m8	hsa-miR-214^brain	ACAGCAGGCACAGACAGGCAG
miR-216	4832	4838	1A	hsa-miR-216	UAAUCUCAGCUGGCAACUGUG
miR-219	7177	7183	1A	hsa-miR-219^brain	UGAUUGUCCAAACGCAAUUCU
miR-219	7177	7183	1A	hsa-miR-219^brain	UGAUUGUCCAAACGCAAUUCU
miR-23	1598	1605	1A,m8	hsa-miR-23a^brain	AUCACAUUGCCAGGGAUUUCC
				hsa-miR-23b^brain	AUCACAUUGCCAGGGAUUACC
				hsa-miR-23a^brain	AUCACAUUGCCAGGGAUUUCC
				hsa-miR-23b^brain	AUCACAUUGCCAGGGAUUACC
				hsa-miR-23a^brain	AUCACAUUGCCAGGGAUUUCC
				hsa-miR-23b^brain	AUCACAUUGCCAGGGAUUACC
miR-24	4746	4752	1A	hsa-miR-24^SZ	UGGCUCAGUUCAGCAGGAACAG
miR-26	1717	1723	1A	hsa-miR-26a^brain	UUCAAGUAAUCCAGGAUAGGC
				hsa-miR-26b^SZ	UUCAAGUAAUUCAGGAUAGGUU
				hsa-miR-26a^brain	UUCAAGUAAUCCAGGAUAGGC
				hsa-miR-26b^SZ	UUCAAGUAAUUCAGGAUAGGUU
miR-299-5p	5288	5294	1A	hsa-miR-299-5p	UGGUUUACCGUCCCACAUACAU
miR-30-3p	1629	1635	m8	hsa-miR-30a-3p	CUUUCAGUCGGAUGUUUGCAGC
miR-30-3p	1629	1635	m8	hsa-miR-30e-3p	CUUUCAGUCGGAUGUUUACAGC
miR-30-5p	3776	3782	m8	hsa-miR-30a-5p	UGUAAACAUCCUCGACUGGAAG
				hsa-miR-30c^brain	UGUAAACAUCCUACACUCUCAGC
				hsa-miR-30d^SZ	UGUAAACAUCCCCGACUGGAAG
				hsa-miR-30b^SZ	UGUAAACAUCCUACACUCAGCU
				hsa-miR-30e-5p	UGUAAACAUCCUUGACUGGA
miR-323	1598	1604	1A	hsa-miR-323^brain	GCACAUUACACGGUCGACCUCU
				hsa-miR-323^brain	GCACAUUACACGGUCGACCUCU
				hsa-miR-323^brain	GCACAUUACACGGUCGACCUCU
miR-324-3p	1891	1897	m8	hsa-miR-324-3p	CCACUGCCCCAGGUGCUGCUGG
miR-326	2802	2808	m8	hsa-miR-326	CCUCUGGGCCCUUCCUCCAG
miR-33	1262	1268	1A	hsa-miR-33	GUGCAUUGUAGUUGCAUUG
				hsa-miR-33b	GUGCAUUGCUGUUGCAUUGCA
				hsa-miR-33	GUGCAUUGUAGUUGCAUUG
				hsa-miR-33b	GUGCAUUGCUGUUGCAUUGCA
miR-339	4300	4306	1A	hsa-miR-339	UCCCUGUCCUCCAGGAGCUCA
miR-339	4300	4306	1A	hsa-miR-339	UCCCUGUCCUCCAGGAGCUCA
miR-34/449	417	423	m8	hsa-miR-34a^brain	UGGCAGUGUCUUAGCUGGUUGUU
				hsa-miR-34c	AGGCAGUGUAGUUAGCUGAUUGC
				hsa-miR-449	UGGCAGUGUAUUGUUAGCUGGU
				hsa-miR-449b	AGGCAGUGUAUUGUUAGCUGGC
miR-340	116	122	m8	hsa-miR-340	UCCGUCUCAGUUACUUUAUAGCC
miR-342	2489	2495	1A	hsa-miR-342^brain	UCUCACACAGAAAUCGCACCCGUC
miR-34b	878	884	m8	hsa-miR-34b	UAGGCAGUGUCAUUAGCUGAUUG
miR-34b	878	884	m8	hsa-miR-34b	UAGGCAGUGUCAUUAGCUGAUUG
miR-361	7148	7154	1A	hsa-miR-361^brain	UUAUCAGAAUCUCCAGGGGUAC
miR-376	1579	1585	1A	hsa-miR-376a	AUCAUAGAGGAAAAUCCACGU
miR-376	1579	1585	1A	hsa-miR-376b	AUCAUAGAGGAAAAUCCAUGUU
miR-377	5253	5259	m8	hsa-miR-377	AUCACACAAAGGCAACUUUUGU
miR-378	7197	7203	1A	hsa-miR-378	CUCCUGACUCCAGGUCCUGUGU
miR-378	7197	7203	1A	hsa-miR-378	CUCCUGACUCCAGGUCCUGUGU
miR-381	2531	2537	1A	hsa-miR-381	UAUACAAGGGCAAGCUCUCUGU
miR-381	2531	2537	1A	hsa-miR-381	UAUACAAGGGCAAGCUCUCUGU
miR-384	992	998	m8	hsa-miR-384	AUUCCUAGAAAUUGUUCAUA
miR-410	7409	7415	1A	hsa-miR-410	AAUAUAACACAGAUGGCCUGU
miR-411	5207	5214	1A,m8	hsa-miR-411	AACACGGUCCACUAACCCUCAGU
miR-431	1624	1630	m8	hsa-miR-431	UGUCUUGCAGGCCGUCAUGCA
miR-433-5p	1010	1016	m8	hsa-miR-433-5p	UACGGUGAGCCUGUCAUUAUUC
miR-450	3689	3695	1A	hsa-miR-450	UUUUUGCGAUGUGUUCCUAAUA
miR-451	119	125	1A	hsa-miR-451^brain	AAACCGUUACCAUUACUGAGUUU
miR-452	359	365	1A	hsa-miR-452	UGUUUGCAGAGGAAACUGAGAC
miR-486	2106	2113	1A,m8	hsa-miR-486	UCCUGUACUGAGCUGCCCCGAG
miR-493-5p	2104	2110	m8	hsa-miR-493-5p	UUGUACAUGGUAGGCUUUCAUU
miR-494	754	760	m8	hsa-miR-494^brain	UGAAACAUACACGGGAAACCUCUU
miR-495	643	649	1A	hsa-miR-495^brain	AAACAAACAUGGUGCACUUCUUU
miR-495	643	649	1A	hsa-miR-495^brain	AAACAAACAUGGUGCACUUCUUU
miR-499	5020	5026	1A	hsa-miR-499	UUAAGACUUGCAGUGAUGUUUAA
miR-499	5020	5026	1A	hsa-miR-499	UUAAGACUUGCAGUGAUGUUUAA
miR-539	1934	1940	1A	hsa-miR-539	GGAGAAAUUAUCCUUGGUGUGU
miR-539	1934	1940	1A	hsa-miR-539	GGAGAAAUUAUCCUUGGUGUGU
miR-543	1792	1798	m8	hsa-miR-543	AAACAUUCGCGGUGCACUUCU
miR-93.hd/291-3p/294/295/302/372/373/520	523	530	1A,m8	hsa-miR-93^brain	AAAGUGCUGUUCGUGCAGGUAG
				hsa-miR-302a	UAAGUGCUUCCAUGUUUUGGUGA
				hsa-miR-302b	UAAGUGCUUCCAUGUUUUAGUAG
				hsa-miR-302c	UAAGUGCUUCCAUGUUUCAGUGG
				hsa-miR-302d	UAAGUGCUUCCAUGUUUGAGUGU
				hsa-miR-372	AAAGUGCUGCGACAUUUGAGCGU
				hsa-miR-373	GAAGUGCUUCGAUUUUGGGGUGU
				hsa-miR-520e	AAAGUGCUUCCUUUUUGAGGG
				hsa-miR-520a	AAAGUGCUUCCCUUUGGACUGU
				hsa-miR-520b	AAAGUGCUUCCUUUUAGAGGG
				hsa-miR-520c	AAAGUGCUUCCUUUUAGAGGGUU
				hsa-miR-520d	AAAGUGCUUCUCUUUGGUGGGUU
miR-96	2441	2448	1A,m8	hsa-miR-96^brain	UUUGGCACUAGCACAUUUUUGC

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.