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| GeneID |
23020
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| Symbol |
SNRNP200
|
| Synonyms |
ASCC3L1|BRR2|HELIC2|U5-200KD
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| Description |
small nuclear ribonucleoprotein 200kDa (U5) |
| See related |
HGNC:30859|MIM:601664|Ensembl:ENSG00000144028|HPRD:03391| |
| Locus tag |
- |
| Gene type |
protein-coding |
| Map location |
2q11.2 |
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| Gene set name |
Method of gene set |
Evidence |
Info |
| Network | Shortest path distance of core genes in the Human protein-protein interaction network | Contribution to shortest path in PPI network: 0.0454 | |
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| General Gene Expression (microarray) ? |
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| Gene Expression in Brain Regions (new) |
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| Top co-expressed genes in Brain Regions (new) |
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| Gene | Pearson's Correlation | Spearman's Correlation | | |
| Top 10 positively co-expressed genes |
| YTHDF1 | 0.95 | 0.96 | | |
| KIAA1967 | 0.95 | 0.95 | | |
| VPS39 | 0.95 | 0.96 | | |
| ZNF263 | 0.95 | 0.95 | | |
| USP22 | 0.94 | 0.96 | | |
| ZFYVE1 | 0.94 | 0.95 | | |
| FBXO42 | 0.94 | 0.95 | | |
| USP19 | 0.94 | 0.94 | | |
| RNF216 | 0.94 | 0.95 | | |
| QRICH1 | 0.94 | 0.95 | | |
Top 10 negatively co-expressed genes | | AF347015.31 | -0.82 | -0.87 | | |
| MT-CO2 | -0.81 | -0.87 | | |
| AF347015.21 | -0.80 | -0.91 | | |
| AF347015.27 | -0.80 | -0.86 | | |
| AF347015.8 | -0.79 | -0.85 | | |
| MT-CYB | -0.78 | -0.83 | | |
| AF347015.33 | -0.77 | -0.81 | | |
| HIGD1B | -0.75 | -0.82 | | |
| AF347015.15 | -0.74 | -0.82 | | |
| AF347015.2 | -0.74 | -0.81 | | |
|
| Molecular function | GO term | Evidence | Neuro keywords | PubMed ID |
|---|
| GO:0000166 | nucleotide binding | IEA | | - |
| GO:0003676 | nucleic acid binding | IEA | | - |
| GO:0005515 | protein binding | IPI | | 9774689 |17353931 |
| GO:0005524 | ATP binding | IC | | 9539711 |
| GO:0016787 | hydrolase activity | IEA | | - |
| GO:0008026 | ATP-dependent helicase activity | IDA | | 9539711 |
| GO:0017111 | nucleoside-triphosphatase activity | IEA | | - |
| Biological process | GO term | Evidence | Neuro keywords | PubMed ID |
|---|
| GO:0000354 | cis assembly of pre-catalytic spliceosome | IC | | 9539711 |
| GO:0000398 | nuclear mRNA splicing, via spliceosome | EXP | | 12226669 |
| GO:0008380 | RNA splicing | IDA | | 8670905 |
| Cellular component | GO term | Evidence | Neuro keywords | PubMed ID |
|---|
| GO:0005634 | nucleus | IEA | | - |
| GO:0005681 | spliceosome | IDA | | 8670905 |
| GO:0005682 | snRNP U5 | IDA | | 9539711 |
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