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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Datasets Gene Ranking

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Gene Page: QKI

Summary

GeneID

9444

Symbol

QKI

Synonyms

DKFZp586I0923|Hqk|QK|QK1|QK3

Description

quaking homolog, KH domain RNA binding (mouse)

Locus tag

Gene type

protein-coding

Map location

6q26|6q26-q27

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

Literature

High-throughput literature-search

Co-occurance with Schizophrenia keywords: [schizophrenias, schizophrenic, schizophrenia]

Click to show detail

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

NDE1

0.80

0.78

SALL1

0.79

0.78

JAM3

0.78

0.82

GAB1

0.78

0.83

TRIM59

0.77

0.76

TTF2

0.76

0.77

MYBL1

0.75

0.79

BBX

0.75

0.82

DUSP10

0.75

0.68

MOBKL2B

0.74

0.84

Top 10 negatively co-expressed genes

IL32

-0.32

-0.48

ST20

-0.32

-0.51

C16orf14

-0.31

-0.38

SYCP3

-0.30

-0.41

DUSP23

-0.30

-0.38

AC044839.2

-0.28

-0.27

TTC9B

-0.28

-0.37

AC087071.1

-0.28

-0.47

CLDND2

-0.27

-0.34

AC016757.1

-0.27

-0.38

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0003723

RNA binding

IEA

GO:0005515

protein binding

IPI

16713569

GO:0017124

SH3 domain binding

IEA

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0006397

mRNA processing

IEA

GO:0006417

regulation of translation

IEA

GO:0008380

RNA splicing

IEA

GO:0006810

transport

IEA

GO:0007275

multicellular organismal development

IEA

GO:0030154

cell differentiation

IEA

GO:0051028

mRNA transport

IEA

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005634

nucleus

IEA

GO:0005737

cytoplasm

IEA

Interactions

Shown by Network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
DAZ4	DAZ \| DAZ1 \| pDP1680 \| pDP1681	deleted in azoospermia 4	-	HPRD	12511597
HNRNPK	CSBP \| FLJ41122 \| HNRPK \| TUNP	heterogeneous nuclear ribonucleoprotein K	Two-hybrid	BioGRID	16189514
PRMT1	ANM1 \| HCP1 \| HRMT1L2 \| IR1B4	protein arginine methyltransferase 1	-	HPRD	12529443

Pathway annotation

Pathway name	Pathway size	# SZGR genes in pathway	Info
NAKAMURA_TUMOR_ZONE_PERIPHERAL_VS_CENTRAL_UP	285	181	All SZGR genes in this pathway
NAKAMURA_TUMOR_ZONE_PERIPHERAL_VS_CENTRAL_DN	634	384	All SZGR genes in this pathway
SCHUETZ_BREAST_CANCER_DUCTAL_INVASIVE_UP	351	230	All SZGR genes in this pathway
FULCHER_INFLAMMATORY_RESPONSE_LECTIN_VS_LPS_DN	463	290	All SZGR genes in this pathway
THUM_SYSTOLIC_HEART_FAILURE_DN	244	147	All SZGR genes in this pathway
CHARAFE_BREAST_CANCER_LUMINAL_VS_MESENCHYMAL_DN	460	312	All SZGR genes in this pathway
DOANE_RESPONSE_TO_ANDROGEN_DN	241	146	All SZGR genes in this pathway
BORCZUK_MALIGNANT_MESOTHELIOMA_UP	305	185	All SZGR genes in this pathway
VECCHI_GASTRIC_CANCER_ADVANCED_VS_EARLY_UP	175	120	All SZGR genes in this pathway
LEE_NEURAL_CREST_STEM_CELL_DN	118	79	All SZGR genes in this pathway
TIEN_INTESTINE_PROBIOTICS_2HR_DN	88	53	All SZGR genes in this pathway
TIEN_INTESTINE_PROBIOTICS_6HR_DN	167	100	All SZGR genes in this pathway
KIM_WT1_TARGETS_8HR_UP	164	122	All SZGR genes in this pathway
DODD_NASOPHARYNGEAL_CARCINOMA_DN	1375	806	All SZGR genes in this pathway
RODRIGUES_THYROID_CARCINOMA_POORLY_DIFFERENTIATED_DN	805	505	All SZGR genes in this pathway
RODRIGUES_THYROID_CARCINOMA_DN	77	52	All SZGR genes in this pathway
LANDIS_BREAST_CANCER_PROGRESSION_DN	70	43	All SZGR genes in this pathway
CHIARADONNA_NEOPLASTIC_TRANSFORMATION_CDC25_DN	153	100	All SZGR genes in this pathway
BERENJENO_ROCK_SIGNALING_NOT_VIA_RHOA_DN	48	34	All SZGR genes in this pathway
GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_DN	1781	1082	All SZGR genes in this pathway
LANDIS_ERBB2_BREAST_TUMORS_324_DN	149	93	All SZGR genes in this pathway
MCBRYAN_PUBERTAL_BREAST_4_5WK_DN	196	131	All SZGR genes in this pathway
MCBRYAN_PUBERTAL_BREAST_5_6WK_DN	137	97	All SZGR genes in this pathway
MCBRYAN_PUBERTAL_BREAST_6_7WK_UP	197	135	All SZGR genes in this pathway
MCBRYAN_PUBERTAL_TGFB1_TARGETS_UP	169	127	All SZGR genes in this pathway
EBAUER_TARGETS_OF_PAX3_FOXO1_FUSION_UP	207	128	All SZGR genes in this pathway
PEREZ_TP63_TARGETS	355	243	All SZGR genes in this pathway
FARMER_BREAST_CANCER_APOCRINE_VS_BASAL	330	217	All SZGR genes in this pathway
FARMER_BREAST_CANCER_BASAL_VS_LULMINAL	330	215	All SZGR genes in this pathway
DACOSTA_UV_RESPONSE_VIA_ERCC3_DN	855	609	All SZGR genes in this pathway
DACOSTA_UV_RESPONSE_VIA_ERCC3_COMMON_DN	483	336	All SZGR genes in this pathway
MARTORIATI_MDM4_TARGETS_FETAL_LIVER_DN	514	319	All SZGR genes in this pathway
NUYTTEN_NIPP1_TARGETS_UP	769	437	All SZGR genes in this pathway
NUYTTEN_EZH2_TARGETS_UP	1037	673	All SZGR genes in this pathway
LOPEZ_MBD_TARGETS	957	597	All SZGR genes in this pathway
TCGA_GLIOBLASTOMA_COPY_NUMBER_DN	31	21	All SZGR genes in this pathway
SHEPARD_BMYB_MORPHOLINO_UP	205	126	All SZGR genes in this pathway
BECKER_TAMOXIFEN_RESISTANCE_DN	52	37	All SZGR genes in this pathway
FLECHNER_BIOPSY_KIDNEY_TRANSPLANT_OK_VS_DONOR_UP	555	346	All SZGR genes in this pathway
ZHAN_MULTIPLE_MYELOMA_CD1_AND_CD2_UP	89	51	All SZGR genes in this pathway
BLALOCK_ALZHEIMERS_DISEASE_INCIPIENT_UP	390	242	All SZGR genes in this pathway
RUAN_RESPONSE_TO_TROGLITAZONE_UP	25	15	All SZGR genes in this pathway
CUI_TCF21_TARGETS_2_DN	830	547	All SZGR genes in this pathway
RUAN_RESPONSE_TO_TNF_DN	84	50	All SZGR genes in this pathway
BLALOCK_ALZHEIMERS_DISEASE_UP	1691	1088	All SZGR genes in this pathway
APRELIKOVA_BRCA1_TARGETS	49	33	All SZGR genes in this pathway
LU_AGING_BRAIN_UP	262	186	All SZGR genes in this pathway
MA_PITUITARY_FETAL_VS_ADULT_UP	29	21	All SZGR genes in this pathway
GENTILE_UV_RESPONSE_CLUSTER_D6	37	25	All SZGR genes in this pathway
GENTILE_UV_HIGH_DOSE_DN	312	203	All SZGR genes in this pathway
DAZARD_RESPONSE_TO_UV_NHEK_DN	318	220	All SZGR genes in this pathway
DAZARD_UV_RESPONSE_CLUSTER_G6	153	112	All SZGR genes in this pathway
BURTON_ADIPOGENESIS_6	189	112	All SZGR genes in this pathway
BILD_CTNNB1_ONCOGENIC_SIGNATURE	82	52	All SZGR genes in this pathway
DOUGLAS_BMI1_TARGETS_UP	566	371	All SZGR genes in this pathway
DURCHDEWALD_SKIN_CARCINOGENESIS_DN	264	168	All SZGR genes in this pathway
CREIGHTON_ENDOCRINE_THERAPY_RESISTANCE_5	482	296	All SZGR genes in this pathway
LEIN_OLIGODENDROCYTE_MARKERS	74	53	All SZGR genes in this pathway
MARTINEZ_RB1_TARGETS_UP	673	430	All SZGR genes in this pathway
MARTINEZ_TP53_TARGETS_DN	593	372	All SZGR genes in this pathway
MARTINEZ_RB1_AND_TP53_TARGETS_UP	601	369	All SZGR genes in this pathway
MASSARWEH_TAMOXIFEN_RESISTANCE_UP	578	341	All SZGR genes in this pathway
SMID_BREAST_CANCER_RELAPSE_IN_BONE_DN	315	197	All SZGR genes in this pathway
SMID_BREAST_CANCER_BASAL_UP	648	398	All SZGR genes in this pathway
IZADPANAH_STEM_CELL_ADIPOSE_VS_BONE_UP	126	92	All SZGR genes in this pathway
LABBE_TGFB1_TARGETS_UP	102	64	All SZGR genes in this pathway
TOOKER_GEMCITABINE_RESISTANCE_DN	122	84	All SZGR genes in this pathway
SWEET_LUNG_CANCER_KRAS_DN	435	289	All SZGR genes in this pathway
HOFFMANN_IMMATURE_TO_MATURE_B_LYMPHOCYTE_DN	50	36	All SZGR genes in this pathway
SHEDDEN_LUNG_CANCER_GOOD_SURVIVAL_A4	196	124	All SZGR genes in this pathway
HAN_SATB1_TARGETS_DN	442	275	All SZGR genes in this pathway
MILI_PSEUDOPODIA_HAPTOTAXIS_UP	518	299	All SZGR genes in this pathway
YAGI_AML_WITH_11Q23_REARRANGED	351	238	All SZGR genes in this pathway
DUTERTRE_ESTRADIOL_RESPONSE_24HR_DN	505	328	All SZGR genes in this pathway
PILON_KLF1_TARGETS_DN	1972	1213	All SZGR genes in this pathway
JOHNSTONE_PARVB_TARGETS_1_DN	63	39	All SZGR genes in this pathway
JOHNSTONE_PARVB_TARGETS_3_DN	918	550	All SZGR genes in this pathway
BRUINS_UVC_RESPONSE_EARLY_LATE	317	190	All SZGR genes in this pathway
KOINUMA_TARGETS_OF_SMAD2_OR_SMAD3	824	528	All SZGR genes in this pathway
GOBERT_OLIGODENDROCYTE_DIFFERENTIATION_DN	1080	713	All SZGR genes in this pathway
WAKABAYASHI_ADIPOGENESIS_PPARG_RXRA_BOUND_8D	882	506	All SZGR genes in this pathway
KRIEG_HYPOXIA_NOT_VIA_KDM3A	770	480	All SZGR genes in this pathway
LIM_MAMMARY_STEM_CELL_UP	489	314	All SZGR genes in this pathway

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-1/206	2437	2444	1A,m8	hsa-miR-1	UGGAAUGUAAAGAAGUAUGUA
				hsa-miR-206^SZ	UGGAAUGUAAGGAAGUGUGUGG
				hsa-miR-613	AGGAAUGUUCCUUCUUUGCC
miR-101	3672	3678	1A	hsa-miR-101	UACAGUACUGUGAUAACUGAAG
miR-103/107	418	424	1A	hsa-miR-103^brain	AGCAGCAUUGUACAGGGCUAUGA
miR-103/107	418	424	1A	hsa-miR-107^brain	AGCAGCAUUGUACAGGGCUAUCA
miR-124.1	619	626	1A,m8	hsa-miR-124a	UUAAGGCACGCGGUGAAUGCCA
miR-124/506	618	625	1A,m8	hsa-miR-506	UAAGGCACCCUUCUGAGUAGA
miR-124/506	618	625	1A,m8	hsa-miR-124^brain	UAAGGCACGCGGUGAAUGCC
miR-125/351	3244	3250	1A	hsa-miR-125b^brain	UCCCUGAGACCCUAACUUGUGA
miR-125/351	3244	3250	1A	hsa-miR-125a^brain	UCCCUGAGACCCUUUAACCUGUG
miR-128	1369	1375	1A	hsa-miR-128a	UCACAGUGAACCGGUCUCUUUU
miR-128	1369	1375	1A	hsa-miR-128b	UCACAGUGAACCGGUCUCUUUC
miR-130/301	111	117	m8	hsa-miR-130a^brain	CAGUGCAAUGUUAAAAGGGCAU
				hsa-miR-301	CAGUGCAAUAGUAUUGUCAAAGC
				hsa-miR-130b^brain	CAGUGCAAUGAUGAAAGGGCAU
				hsa-miR-454-3p	UAGUGCAAUAUUGCUUAUAGGGUUU
				hsa-miR-130a^brain	CAGUGCAAUGUUAAAAGGGCAU
				hsa-miR-301	CAGUGCAAUAGUAUUGUCAAAGC
				hsa-miR-130b^brain	CAGUGCAAUGAUGAAAGGGCAU
				hsa-miR-454-3p	UAGUGCAAUAUUGCUUAUAGGGUUU
miR-132/212	3557	3563	1A	hsa-miR-212^SZ	UAACAGUCUCCAGUCACGGCC
miR-132/212	3557	3563	1A	hsa-miR-132^brain	UAACAGUCUACAGCCAUGGUCG
miR-133	3567	3573	1A	hsa-miR-133a	UUGGUCCCCUUCAACCAGCUGU
miR-133	3567	3573	1A	hsa-miR-133b	UUGGUCCCCUUCAACCAGCUA
miR-137	4146	4153	1A,m8	hsa-miR-137	UAUUGCUUAAGAAUACGCGUAG
miR-141/200a	3944	3950	m8	hsa-miR-141	UAACACUGUCUGGUAAAGAUGG
miR-141/200a	3944	3950	m8	hsa-miR-200a	UAACACUGUCUGGUAACGAUGU
miR-142-5p	3661	3667	m8	hsa-miR-142-5p	CAUAAAGUAGAAAGCACUAC
miR-144	494	501	1A,m8	hsa-miR-144	UACAGUAUAGAUGAUGUACUAG
miR-144	494	501	1A,m8	hsa-miR-144	UACAGUAUAGAUGAUGUACUAG
miR-145	4002	4009	1A,m8	hsa-miR-145	GUCCAGUUUUCCCAGGAAUCCCUU
miR-145	4002	4009	1A,m8	hsa-miR-145	GUCCAGUUUUCCCAGGAAUCCCUU
miR-148/152	3428	3435	1A,m8	hsa-miR-148a	UCAGUGCACUACAGAACUUUGU
				hsa-miR-152^brain	UCAGUGCAUGACAGAACUUGGG
				hsa-miR-148b	UCAGUGCAUCACAGAACUUUGU
miR-15/16/195/424/497	1479	1486	1A,m8	hsa-miR-15a^brain	UAGCAGCACAUAAUGGUUUGUG
				hsa-miR-16^brain	UAGCAGCACGUAAAUAUUGGCG
				hsa-miR-15b^brain	UAGCAGCACAUCAUGGUUUACA
				hsa-miR-195^SZ	UAGCAGCACAGAAAUAUUGGC
				hsa-miR-424	CAGCAGCAAUUCAUGUUUUGAA
				hsa-miR-497	CAGCAGCACACUGUGGUUUGU
miR-17-5p/20/93.mr/106/519.d	113	119	m8	hsa-miR-17-5p	CAAAGUGCUUACAGUGCAGGUAGU
				hsa-miR-20a^brain	UAAAGUGCUUAUAGUGCAGGUAG
				hsa-miR-106a	AAAAGUGCUUACAGUGCAGGUAGC
				hsa-miR-106b^SZ	UAAAGUGCUGACAGUGCAGAU
				hsa-miR-20b^SZ	CAAAGUGCUCAUAGUGCAGGUAG
				hsa-miR-519d	CAAAGUGCCUCCCUUUAGAGUGU
miR-181	3770	3776	1A	hsa-miR-181a^brain	AACAUUCAACGCUGUCGGUGAGU
				hsa-miR-181b^SZ	AACAUUCAUUGCUGUCGGUGGG
				hsa-miR-181c^brain	AACAUUCAACCUGUCGGUGAGU
				hsa-miR-181d^brain	AACAUUCAUUGUUGUCGGUGGGUU
miR-19	119	126	1A,m8	hsa-miR-19a	UGUGCAAAUCUAUGCAAAACUGA
miR-19	119	126	1A,m8	hsa-miR-19b	UGUGCAAAUCCAUGCAAAACUGA
miR-200bc/429	3808	3814	1A	hsa-miR-200b	UAAUACUGCCUGGUAAUGAUGAC
				hsa-miR-200c	UAAUACUGCCGGGUAAUGAUGG
				hsa-miR-429	UAAUACUGUCUGGUAAAACCGU
miR-208	15	21	1A	hsa-miR-208	AUAAGACGAGCAAAAAGCUUGU
miR-208	15	21	1A	hsa-miR-208	AUAAGACGAGCAAAAAGCUUGU
miR-214	416	422	m8	hsa-miR-214^brain	ACAGCAGGCACAGACAGGCAG
miR-214	416	422	m8	hsa-miR-214^brain	ACAGCAGGCACAGACAGGCAG
miR-223	2868	2874	m8	hsa-miR-223	UGUCAGUUUGUCAAAUACCCC
miR-224	102	109	1A,m8	hsa-miR-224	CAAGUCACUAGUGGUUCCGUUUA
miR-23	3588	3594	m8	hsa-miR-23a^brain	AUCACAUUGCCAGGGAUUUCC
miR-23	3588	3594	m8	hsa-miR-23b^brain	AUCACAUUGCCAGGGAUUACC
miR-24	1305	1311	1A	hsa-miR-24^SZ	UGGCUCAGUUCAGCAGGAACAG
miR-25/32/92/363/367	561	567	1A	hsa-miR-25^brain	CAUUGCACUUGUCUCGGUCUGA
				hsa-miR-32	UAUUGCACAUUACUAAGUUGC
				hsa-miR-92	UAUUGCACUUGUCCCGGCCUG
				hsa-miR-367	AAUUGCACUUUAGCAAUGGUGA
				hsa-miR-92b^SZ	UAUUGCACUCGUCCCGGCCUC
miR-27	1369	1376	1A,m8	hsa-miR-27a^brain	UUCACAGUGGCUAAGUUCCGC
miR-27	1369	1376	1A,m8	hsa-miR-27b^brain	UUCACAGUGGCUAAGUUCUGC
miR-30-5p	3947	3954	1A,m8	hsa-miR-30a-5p	UGUAAACAUCCUCGACUGGAAG
				hsa-miR-30c^brain	UGUAAACAUCCUACACUCUCAGC
				hsa-miR-30d^SZ	UGUAAACAUCCCCGACUGGAAG
				hsa-miR-30b^SZ	UGUAAACAUCCUACACUCAGCU
				hsa-miR-30e-5p	UGUAAACAUCCUUGACUGGA
miR-323	3588	3594	1A	hsa-miR-323^brain	GCACAUUACACGGUCGACCUCU
miR-33	559	565	1A	hsa-miR-33	GUGCAUUGUAGUUGCAUUG
miR-33	559	565	1A	hsa-miR-33b	GUGCAUUGCUGUUGCAUUGCA
miR-330	3815	3821	1A	hsa-miR-330^brain	GCAAAGCACACGGCCUGCAGAGA
miR-370	3765	3771	1A	hsa-miR-370^brain	GCCUGCUGGGGUGGAACCUGG
miR-485-5p	66	72	m8	hsa-miR-485-5p	AGAGGCUGGCCGUGAUGAAUUC
miR-496	2747	2753	m8	hsa-miR-496	AUUACAUGGCCAAUCUC
miR-499	3539	3546	1A,m8	hsa-miR-499	UUAAGACUUGCAGUGAUGUUUAA
miR-499	3539	3546	1A,m8	hsa-miR-499	UUAAGACUUGCAGUGAUGUUUAA
miR-503	1480	1486	1A	hsa-miR-503	UAGCAGCGGGAACAGUUCUGCAG
miR-505	3530	3536	1A	hsa-miR-505	GUCAACACUUGCUGGUUUCCUC
miR-9	799	805	m8	hsa-miR-9^SZ	UCUUUGGUUAUCUAGCUGUAUGA
miR-9	799	805	m8	hsa-miR-9^SZ	UCUUUGGUUAUCUAGCUGUAUGA

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.