DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LKENP
Uniprot ID:
Q96SB4
Source protein:
SRSF protein kinase 1
Source gene:
SRPK1
Class:
DEG_APCC_KENBOX_2
Location:
317:321
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.8488
ASA_SCORE:
110.3
COIL:
0.8948
CONS_SCORE:
0.3357
DSS_SCORE:
0.8189
HELIX:
0.0778
FCONS_SCORE:
0.9837
RIG_SCORE:
0.5747
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.E308Q
TCGA-34-8454
LUSC
TCGA
LKENP
DEG_APCC_KENBOX_2
0.0833
p.E331K
TCGA-55-8302
LUAD
TCGA
LKENP
DEG_APCC_KENBOX_2
0.0556
p.E319D
TCGA-AA-3984
COAD
TCGA
LKENP
DEG_APCC_KENBOX_2
0.6758
p.K324E
TCGA-EE-A2GI
SKCM
TCGA
LKENP
DEG_APCC_KENBOX_2
0.3611
p.E319K
TCGA-QC-A7B5
SARC
TCGA
LKENP
DEG_APCC_KENBOX_2
0.7022
p.K318N
TCGA-QC-A7B5
SARC
TCGA
LKENP
DEG_APCC_KENBOX_2
0.6918
p.E310D
TCGA-VQ-A8P2
STAD
TCGA
LKENP
DEG_APCC_KENBOX_2
0.1389
p.Q324R
DO1658
BRCA
ICGC
LKENP
DEG_APCC_KENBOX_2
0.3611
p.C307Y
DO222574
BTCA
ICGC
LKENP
DEG_APCC_KENBOX_2
0.0556
p.C307Y
DO26898
LUSC
ICGC
LKENP
DEG_APCC_KENBOX_2
0.0556
p.D316H
DO44448
HNSC
ICGC
LKENP
DEG_APCC_KENBOX_2
0.3056
p.Q311K
DO228986
LICA
ICGC
LKENP
DEG_APCC_KENBOX_2
0.6111
p.E315K
DO45312
LUAD
ICGC
LKENP
DEG_APCC_KENBOX_2
0.2778
p.E314D
SIDM00845
Burkitt's Lymphoma
GDSC
LKENP
DEG_APCC_KENBOX_2
0.25
p.E314D
Daudi
haematopoietic_and_lymphoid_tissue
COSMIC
LKENP
DEG_APCC_KENBOX_2
0.25
p.K318T
Daudi
haematopoietic_and_lymphoid_tissue
COSMIC
LKENP
DEG_APCC_KENBOX_2
0.7306
p.D323Y
KNS-62
lung
COSMIC
LKENP
DEG_APCC_KENBOX_2
0.2778
p.Q324H
KNS-62
lung
COSMIC
LKENP
DEG_APCC_KENBOX_2
0.3611
Drug responses associated with SRPK1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
SIDM00588
HNSC|head_and_neck
p.G476E (No)
GDSC
XMD11-85h
12.2083
SIDM01032
ESCA|oesophagus
p.A10S (No)
GDSC
XMD11-85h
53.2231
SIDM00683
PRAD|prostate
p.P245L (No)
GDSC
XMD11-85h
27.4782
SIDM00535
UNCLASSIFIED|chondrosarcoma
p.C19S (No)
GDSC
XMD11-85h
104.443
SIDM00651
UNCLASSIFIED|lung_NSCLC_large_cell
p.C356Y (No)
GDSC
XMD11-85h
53.1938
SIDM01090
COREAD|large_intestine
p.I417V (No)
GDSC
XMD11-85h
32.6685
SIDM00711
SCLC|lung_small_cell_carcinoma
p.R649L (No)
GDSC
XMD11-85h
328.3027
SIDM00946
ALL|T_cell_leukemia
p.G297S (No)
GDSC
XMD11-85h
10.4455
SIDM00602
STAD|stomach
p.G595fs*3 (No)
GDSC
XMD11-85h
131.3361
SIDM00999
BLCA|bladder
p.V94I (No)
GDSC
XMD11-85h
23.1162
SIDM00898
BRCA|breast
p.E57Q (No)
GDSC
XMD11-85h
52.3033
SIDM00540
HNSC|head_and_neck
p.R649Q (No)
GDSC
XMD11-85h
35.0731
SIDM00839
COREAD|large_intestine
p.R649Q (No)
GDSC
XMD11-85h
17.8041
SIDM00321
UNCLASSIFIED|ovary
p.R126Q (No)
GDSC
XMD11-85h
22.8688
SIDM00047
LUAD|lung_NSCLC_adenocarcinoma
p.R649L (No)
GDSC
XMD11-85h
24.1027
SIDM00845
UNCLASSIFIED|Burkitt_lymphoma
p.K318T (Yes)
GDSC
XMD11-85h
7.9834
SIDM00845
UNCLASSIFIED|Burkitt_lymphoma
p.E314D (Yes)
GDSC
XMD11-85h
7.9834
SIDM00987
THCA|thyroid
p.R649Q (No)
GDSC
XMD11-85h
5.5729
SIDM00487
COREAD|large_intestine
p.L608I (No)
GDSC
XMD11-85h
21.2454
SIDM00934
PAAD|pancreas
p.S241F (No)
GDSC
XMD11-85h
181.2987
SIDM00193
COREAD|large_intestine
p.F508L (No)
GDSC
XMD11-85h
111.2169
SIDM00118
COREAD|large_intestine
p.N355K (No)
GDSC
XMD11-85h
16.135
All proteins holding degron of LKENP
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q8IVW4
Cyclin-dependent kinase-like 3
DEG_APCC_KENBOX_2
418:422
LKENP
APC,CDC20,FZR1
0.6018
More...
Q8TAM6
Ermin
DEG_APCC_KENBOX_2
79:83
LKENP
APC,CDC20,FZR1
0.9084
More...
Q96SB4
SRSF protein kinase 1
DEG_APCC_KENBOX_2
317:321
LKENP
APC,CDC20,FZR1
0.8488
More...
Q9BSI4
TERF1-interacting nuclear factor 2
DEG_APCC_KENBOX_2
340:344
LKENP
APC,CDC20,FZR1
0.8292
More...
Q9UQ84
Exonuclease 1
DEG_APCC_KENBOX_2
390:394
LKENP
APC,CDC20,FZR1
0.9695
More...
Q9H6X5
Uncharacterized protein C19orf44
DEG_APCC_KENBOX_2
64:68
LKENP
APC,CDC20,FZR1
0.5525
More...