DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LKENP
Uniprot ID:
Q9BSI4
Source protein:
TERF1-interacting nuclear factor 2
Source gene:
TINF2
Class:
DEG_APCC_KENBOX_2
Location:
340:344
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.8292
ASA_SCORE:
101.5
COIL:
0.8286
CONS_SCORE:
0.5816
DSS_SCORE:
0.4925
HELIX:
0.106
FCONS_SCORE:
1.0048
RIG_SCORE:
0.7064
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.L340M
TCGA-AX-A2HC
UCEC
TCGA
LKENP
DEG_APCC_KENBOX_2
0.5999
p.L340M
DO41572
UCEC
ICGC
LKENP
DEG_APCC_KENBOX_2
0.5999
p.K353Q
DO50857
LIRI
ICGC
LKENP
DEG_APCC_KENBOX_2
0.1944
p.P348S
SIDM00967
Ovarian Carcinoma
GDSC
LKENP
DEG_APCC_KENBOX_2
0.2222
p.P348S
ACH-002181
Ovarian Cancer
CCLE
LKENP
DEG_APCC_KENBOX_2
0.2222
p.P348S
OVCA420
ovary
COSMIC
LKENP
DEG_APCC_KENBOX_2
0.2222
p.L331V
MHH-PREB-1
haematopoietic_and_lymphoid_tissue
COSMIC
LKENP
DEG_APCC_KENBOX_2
0.0833
Drug responses associated with TINF2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LKENP
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q8IVW4
Cyclin-dependent kinase-like 3
DEG_APCC_KENBOX_2
418:422
LKENP
APC,CDC20,FZR1
0.6018
More...
Q8TAM6
Ermin
DEG_APCC_KENBOX_2
79:83
LKENP
APC,CDC20,FZR1
0.9084
More...
Q96SB4
SRSF protein kinase 1
DEG_APCC_KENBOX_2
317:321
LKENP
APC,CDC20,FZR1
0.8488
More...
Q9BSI4
TERF1-interacting nuclear factor 2
DEG_APCC_KENBOX_2
340:344
LKENP
APC,CDC20,FZR1
0.8292
More...
Q9UQ84
Exonuclease 1
DEG_APCC_KENBOX_2
390:394
LKENP
APC,CDC20,FZR1
0.9695
More...
Q9H6X5
Uncharacterized protein C19orf44
DEG_APCC_KENBOX_2
64:68
LKENP
APC,CDC20,FZR1
0.5525
More...