DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
PLTST
Uniprot ID:
Q9P2P1
Source protein:
Protein NYNRIN
Source gene:
NYNRIN
Class:
DEG_SPOP_SBC_1
Location:
482:486
E3 ligase:
SPOP
DEGRON score:
0.9851
ASA_SCORE:
66.14
COIL:
0.8772
CONS_SCORE:
0.4473
DSS_SCORE:
0.7372
HELIX:
0.0488
FCONS_SCORE:
1.4297
RIG_SCORE:
0.661
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.Q478H
TCGA-AA-A010
COAD
TCGA
PLTST
DEG_SPOP_SBC_1
0.2222
p.G496V
TCGA-CR-7388
HNSC
TCGA
PLTST
DEG_SPOP_SBC_1
0.0556
p.G496V
DO14284
HNSC
ICGC
PLTST
DEG_SPOP_SBC_1
0.0556
p.P477S
TCGA-EE-A29M
SKCM
TCGA
PLTST
DEG_SPOP_SBC_1
0.1944
p.P477S
DO37404
SKCM
ICGC
PLTST
DEG_SPOP_SBC_1
0.1944
p.D475Y
DO229018
LICA
ICGC
PLTST
DEG_SPOP_SBC_1
0.1389
p.A491S
DO229034
LICA
ICGC
PLTST
DEG_SPOP_SBC_1
0.1944
p.P495L
SIDM00759
Non-Small Cell Lung Carcinoma
GDSC
PLTST
DEG_SPOP_SBC_1
0.0833
p.P495L
NCI-H1975
lung
COSMIC
PLTST
DEG_SPOP_SBC_1
0.0833
Drug responses associated with NYNRIN mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PLTST
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O15060
Zinc finger and BTB domain-containing protein 39
DEG_SPOP_SBC_1
133:137
PLTST
SPOP
0.9248
More...
Q5DID0
Uromodulin-like 1
DEG_SPOP_SBC_1
688:692
PLTST
SPOP
0.9959
More...
Q685J3
Mucin-17
DEG_SPOP_SBC_1
335:339
PLTST
SPOP
0.6619
More...
Q8TES7
Fas-binding factor 1
DEG_SPOP_SBC_1
463:467
PLTST
SPOP
0.9688
More...
Q9P2P1
Protein NYNRIN
DEG_SPOP_SBC_1
482:486
PLTST
SPOP
0.9851
More...
Q2KHR3
Glutamine and serine-rich protein 1
DEG_SPOP_SBC_1
288:292
PLTST
SPOP
0.9317
More...