DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CGC
Degron:
RKENG
Uniprot ID:
Q5T3I0
Source protein:
G patch domain-containing protein 4
Source gene:
GPATCH4
Class:
DEG_APCC_KENBOX_2
Location:
32:36
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.8966
ASA_SCORE:
102.22
COIL:
0.818
CONS_SCORE:
0.6504
DSS_SCORE:
0.4737
HELIX:
0.0752
FCONS_SCORE:
0.9596
RIG_SCORE:
0.7191
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.A45V
TCGA-2W-A8YY
CESC
TCGA
RKENG
DEG_APCC_KENBOX_2
0.0833
p.Q23K
TCGA-VQ-A8DT
STAD
TCGA
RKENG
DEG_APCC_KENBOX_2
0.0833
p.I42M
TCGA-VS-A958
CESC
TCGA
RKENG
DEG_APCC_KENBOX_2
0.1667
p.I37M
DO225028
BRCA
ICGC
RKENG
DEG_APCC_KENBOX_2
0.3056
p.I37M
DO51639
CESC
ICGC
RKENG
DEG_APCC_KENBOX_2
0.3056
p.A40V
DO223732
CESC
ICGC
RKENG
DEG_APCC_KENBOX_2
0.2222
p.G31S
DO229039
LICA
ICGC
RKENG
DEG_APCC_KENBOX_2
0.3056
p.L30R
DO231835
LINC
ICGC
RKENG
DEG_APCC_KENBOX_2
0.2778
p.R37W
SIDM01451
Pancreatic Carcinoma
GDSC
RKENG
DEG_APCC_KENBOX_2
0.3056
p.R37W
ACH-000933
Pancreatic Cancer
CCLE
RKENG
DEG_APCC_KENBOX_2
0.3056
p.R37W
ACH-001540
Liposarcoma
CCLE
RKENG
DEG_APCC_KENBOX_2
0.3056
p.N40D
ACH-000074
Leukemia
CCLE
RKENG
DEG_APCC_KENBOX_2
0.2222
p.N40D
KU812
haematopoietic_and_lymphoid_tissue
COSMIC
RKENG
DEG_APCC_KENBOX_2
0.2222
p.N35D
KU812
haematopoietic_and_lymphoid_tissue
COSMIC
RKENG
DEG_APCC_KENBOX_2
0.6932
Drug responses associated with GPATCH4 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of RKENG
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q13625
Apoptosis-stimulating of p53 protein 2
DEG_APCC_KENBOX_2
114:118
RKENG
APC,CDC20,FZR1
0.7661
More...
Q5THJ4
Intermembrane lipid transfer protein VPS13D
DEG_APCC_KENBOX_2
1588:1592
RKENG
APC,CDC20,FZR1
0.732
More...
Q8TCS8
Polyribonucleotide nucleotidyltransferase 1, mitochondrial
DEG_APCC_KENBOX_2
600:604
RKENG
APC,CDC20,FZR1
0.6929
More...
Q96JQ2
Calmin
DEG_APCC_KENBOX_2
411:415
RKENG
APC,CDC20,FZR1
0.9146
More...
Q5T3I0
G patch domain-containing protein 4
DEG_APCC_KENBOX_2
32:36
RKENG
APC,CDC20,FZR1
0.8966
More...
A8MTL3
RING finger protein 212B
DEG_APCC_KENBOX_2
121:125
RKENG
APC,CDC20,FZR1
0.5043
More...