DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
RKENG
Uniprot ID:
Q96JQ2
Source protein:
Calmin
Source gene:
CLMN
Class:
DEG_APCC_KENBOX_2
Location:
411:415
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9146
ASA_SCORE:
102.94
COIL:
0.856
CONS_SCORE:
0.4233
DSS_SCORE:
0.587
HELIX:
0.1176
FCONS_SCORE:
0.7962
RIG_SCORE:
0.5939
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R411K
TCGA-AZ-4315
COAD
TCGA
RKENG
DEG_APCC_KENBOX_2
0.6126
p.R411K
DO8842
COAD
ICGC
RKENG
DEG_APCC_KENBOX_2
0.6126
p.R411T
TCGA-DS-A0VL
CESC
TCGA
RKENG
DEG_APCC_KENBOX_2
0.6765
p.R411T
DO6332
CESC
ICGC
RKENG
DEG_APCC_KENBOX_2
0.6765
p.S409L
TCGA-FR-A729
SKCM
TCGA
RKENG
DEG_APCC_KENBOX_2
0.2778
p.S409L
DO48618
SKCM
ICGC
RKENG
DEG_APCC_KENBOX_2
0.2778
p.S419F
TCGA-H7-8501
HNSC
TCGA
RKENG
DEG_APCC_KENBOX_2
0.6667
p.S419F
DO14202
HNSC
ICGC
RKENG
DEG_APCC_KENBOX_2
0.6667
p.P401S
TCGA-W3-AA1W
SKCM
TCGA
RKENG
DEG_APCC_KENBOX_2
0.0556
p.P401S
DO51277
SKCM
ICGC
RKENG
DEG_APCC_KENBOX_2
0.0556
p.P421L
DO233290
GACA
ICGC
RKENG
DEG_APCC_KENBOX_2
0.1667
p.P401T
SIDM00673
Breast Carcinoma
GDSC
RKENG
DEG_APCC_KENBOX_2
0.0556
p.P401T
HCC70
breast
COSMIC
RKENG
DEG_APCC_KENBOX_2
0.0556
Drug responses associated with CLMN mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of RKENG
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q13625
Apoptosis-stimulating of p53 protein 2
DEG_APCC_KENBOX_2
114:118
RKENG
APC,CDC20,FZR1
0.7661
More...
Q5THJ4
Intermembrane lipid transfer protein VPS13D
DEG_APCC_KENBOX_2
1588:1592
RKENG
APC,CDC20,FZR1
0.732
More...
Q8TCS8
Polyribonucleotide nucleotidyltransferase 1, mitochondrial
DEG_APCC_KENBOX_2
600:604
RKENG
APC,CDC20,FZR1
0.6929
More...
Q96JQ2
Calmin
DEG_APCC_KENBOX_2
411:415
RKENG
APC,CDC20,FZR1
0.9146
More...
Q5T3I0
G patch domain-containing protein 4
DEG_APCC_KENBOX_2
32:36
RKENG
APC,CDC20,FZR1
0.8966
More...
A8MTL3
RING finger protein 212B
DEG_APCC_KENBOX_2
121:125
RKENG
APC,CDC20,FZR1
0.5043
More...