DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
SPSSGE
Uniprot ID:
O15457
Source protein:
MutS protein homolog 4
Source gene:
MSH4
Class:
DEG_Kelch_Keap1_1
Location:
17:22
E3 ligase:
KEAP1
DEGRON score:
0.9846
ASA_SCORE:
80.1333
COIL:
0.9208
CONS_SCORE:
0.2729
DSS_SCORE:
0.7648
HELIX:
0.0357
FCONS_SCORE:
1.0299
RIG_SCORE:
0.4967
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.Q27H
TCGA-39-5040
LUSC
TCGA
SPSSGE
DEG_Kelch_Keap1_1
0.1944
p.Q27H
TCGA-CV-6933
HNSC
TCGA
SPSSGE
DEG_Kelch_Keap1_1
0.1944
p.Q27H
DO14164
HNSC
ICGC
SPSSGE
DEG_Kelch_Keap1_1
0.1944
p.Q27H
DO45436
LUSC
ICGC
SPSSGE
DEG_Kelch_Keap1_1
0.1944
p.Q27H
SIDM00789
Colorectal Carcinoma
GDSC
SPSSGE
DEG_Kelch_Keap1_1
0.1944
p.Q27H
ACH-000997
Colon/Colorectal Cancer
CCLE
SPSSGE
DEG_Kelch_Keap1_1
0.1944
p.Q27H
ACH-001061
Colon/Colorectal Cancer
CCLE
SPSSGE
DEG_Kelch_Keap1_1
0.1944
p.Q27H
HCT-15
large_intestine
COSMIC
SPSSGE
DEG_Kelch_Keap1_1
0.1944
p.S20W
TCGA-55-1595
LUAD
TCGA
SPSSGE
DEG_Kelch_Keap1_1
0.7874
p.S20W
DO23558
LUAD
ICGC
SPSSGE
DEG_Kelch_Keap1_1
0.7874
p.S12C
TCGA-62-8399
LUAD
TCGA
SPSSGE
DEG_Kelch_Keap1_1
0.1944
p.S12C
DO24606
LUAD
ICGC
SPSSGE
DEG_Kelch_Keap1_1
0.1944
p.R30H
TCGA-AA-3663
COAD
TCGA
SPSSGE
DEG_Kelch_Keap1_1
0.1111
p.R30H
DO9346
COAD
ICGC
SPSSGE
DEG_Kelch_Keap1_1
0.1111
p.A15V
TCGA-AX-A2HD
UCEC
TCGA
SPSSGE
DEG_Kelch_Keap1_1
0.2778
p.A15V
DO42608
UCEC
ICGC
SPSSGE
DEG_Kelch_Keap1_1
0.2778
p.A15V
ACH-001842
Bile Duct Cancer
CCLE
SPSSGE
DEG_Kelch_Keap1_1
0.2778
p.A15V
ACH-001991
Primary
CCLE
SPSSGE
DEG_Kelch_Keap1_1
0.2778
p.S12T
TCGA-CI-6624
READ
TCGA
SPSSGE
DEG_Kelch_Keap1_1
0.1944
p.S12T
DO37130
READ
ICGC
SPSSGE
DEG_Kelch_Keap1_1
0.1944
p.P14L
TCGA-EE-A29V
SKCM
TCGA
SPSSGE
DEG_Kelch_Keap1_1
0.25
p.P14L
DO38006
SKCM
ICGC
SPSSGE
DEG_Kelch_Keap1_1
0.25
p.P29S
TCGA-GN-A4U8
SKCM
TCGA
SPSSGE
DEG_Kelch_Keap1_1
0.1389
p.P29S
DO47320
SKCM
ICGC
SPSSGE
DEG_Kelch_Keap1_1
0.1389
p.S20L
TCGA-IB-7651
PAAD
TCGA
SPSSGE
DEG_Kelch_Keap1_1
0.7667
p.S20L
DO46657
PAAD
ICGC
SPSSGE
DEG_Kelch_Keap1_1
0.7667
p.R24L
TCGA-MN-A4N4
LUAD
TCGA
SPSSGE
DEG_Kelch_Keap1_1
0.2778
p.R24L
DO229029
LICA
ICGC
SPSSGE
DEG_Kelch_Keap1_1
0.2778
p.R24L
DO26250
LUAD
ICGC
SPSSGE
DEG_Kelch_Keap1_1
0.2778
p.R30C
DO233942
GACA
ICGC
SPSSGE
DEG_Kelch_Keap1_1
0.1111
p.P18S
DO222868
MELA
ICGC
SPSSGE
DEG_Kelch_Keap1_1
0.5641
p.S17F
SIDM00325
Esophageal Squamous Cell Carcinoma
GDSC
SPSSGE
DEG_Kelch_Keap1_1
0.7982
p.S17F
ACH-000694
Esophageal Cancer
CCLE
SPSSGE
DEG_Kelch_Keap1_1
0.7982
p.S17F
TE-9
oesophagus
COSMIC
SPSSGE
DEG_Kelch_Keap1_1
0.7982
p.S7P
SIDM01617
Endometrial Carcinoma
GDSC
SPSSGE
DEG_Kelch_Keap1_1
0.0556
p.S7P
ACH-000994
Endometrial/Uterine Cancer
CCLE
SPSSGE
DEG_Kelch_Keap1_1
0.0556
p.V16A
ACH-001669
Leukemia
CCLE
SPSSGE
DEG_Kelch_Keap1_1
0.3056
p.V16A
ACH-002238
Leukemia
CCLE
SPSSGE
DEG_Kelch_Keap1_1
0.3056
p.V16A
GR-ST
haematopoietic_and_lymphoid_tissue
COSMIC
SPSSGE
DEG_Kelch_Keap1_1
0.3056
Drug responses associated with MSH4 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of SPSSGE
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
A8MU46
Smoothelin-like protein 1
DEG_Kelch_Keap1_1
320:325
SPSSGE
KEAP1
0.8915
More...
O15457
MutS protein homolog 4
DEG_Kelch_Keap1_1
17:22
SPSSGE
KEAP1
0.9846
More...
O60292
Signal-induced proliferation-associated 1-like protein 3
DEG_Kelch_Keap1_1
451:456
SPSSGE
KEAP1
0.9304
More...
Q6WKZ4
Rab11 family-interacting protein 1
DEG_Kelch_Keap1_1
717:722
SPSSGE
KEAP1
0.9938
More...
Q9UIF9
Bromodomain adjacent to zinc finger domain protein 2A
DEG_Kelch_Keap1_1
26:31
SPSSGE
KEAP1
0.9651
More...
Q6ZV50
DNA-binding protein RFX8
DEG_Kelch_Keap1_1
8:13
SPSSGE
KEAP1
0.8762
More...