DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VTTTS
Uniprot ID:
P13646
Source protein:
Keratin, type I cytoskeletal 13
Source gene:
KRT13
Class:
DEG_SPOP_SBC_1
Location:
433:437
E3 ligase:
SPOP
DEGRON score:
0.9542
ASA_SCORE:
89.72
COIL:
0.7834
CONS_SCORE:
0.8737
DSS_SCORE:
0.5607
HELIX:
0.0232
FCONS_SCORE:
1.0279
RIG_SCORE:
0.6538
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.T435M
TCGA-AB-2826
LAML
TCGA
VTTTS
DEG_SPOP_SBC_1
0.7423
p.T435M
DO21833
LAML
ICGC
VTTTS
DEG_SPOP_SBC_1
0.7423
p.S440F
TCGA-IG-A5S3
ESCA
TCGA
VTTTS
DEG_SPOP_SBC_1
0.25
p.A423T
DO229036
LICA
ICGC
VTTTS
DEG_SPOP_SBC_1
0.0556
p.A439D
DO229045
LICA
ICGC
VTTTS
DEG_SPOP_SBC_1
0.2778
p.S425N
DO232224
PBCA
ICGC
VTTTS
DEG_SPOP_SBC_1
0.5556
p.V426I
SIDM01261
Breast Carcinoma
GDSC
VTTTS
DEG_SPOP_SBC_1
0.1389
p.V426I
SIDM00868
Non-Cancerous
GDSC
VTTTS
DEG_SPOP_SBC_1
0.1389
p.V426I
SIDM01049
Non-Cancerous
GDSC
VTTTS
DEG_SPOP_SBC_1
0.1389
Drug responses associated with KRT13 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VTTTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P13646
Keratin, type I cytoskeletal 13
DEG_SPOP_SBC_1
433:437
VTTTS
SPOP
0.9542
More...
P13646
Keratin, type I cytoskeletal 13
DEG_SPOP_SBC_1
441:445
VTTTS
SPOP
0.8837
More...
P31629
Transcription factor HIVEP2
DEG_SPOP_SBC_1
440:444
VTTTS
SPOP
0.9813
More...
Q13469
Nuclear factor of activated T-cells, cytoplasmic 2
DEG_SPOP_SBC_1
484:488
VTTTS
SPOP
0.5226
More...
Q96FS4
Signal-induced proliferation-associated protein 1
DEG_SPOP_SBC_1
544:548
VTTTS
SPOP
0.9169
More...
Q9NYZ4
Sialic acid-binding Ig-like lectin 8
DEG_SPOP_SBC_1
233:237
VTTTS
SPOP
0.8068
More...
Q6ZU65
Ubinuclein-2
DEG_SPOP_SBC_1
1283:1287
VTTTS
SPOP
0.5985
More...