DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VTTTS
Uniprot ID:
Q9NYZ4
Source protein:
Sialic acid-binding Ig-like lectin 8
Source gene:
SIGLEC8
Class:
DEG_SPOP_SBC_1
Location:
233:237
E3 ligase:
SPOP
DEGRON score:
0.8068
ASA_SCORE:
66.06
COIL:
0.2544
CONS_SCORE:
0.335
DSS_SCORE:
0.3514
HELIX:
0.004
FCONS_SCORE:
0.5815
RIG_SCORE:
0.801
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R240L
TCGA-05-4424
LUAD
TCGA
VTTTS
DEG_SPOP_SBC_1
0.25
p.R240L
DO23672
LUAD
ICGC
VTTTS
DEG_SPOP_SBC_1
0.25
p.P247A
TCGA-28-5207
GBM
TCGA
VTTTS
DEG_SPOP_SBC_1
0.0556
p.L228F
TCGA-44-6145
LUAD
TCGA
VTTTS
DEG_SPOP_SBC_1
0.1944
p.L228F
DO25123
LUAD
ICGC
VTTTS
DEG_SPOP_SBC_1
0.1944
p.D242N
TCGA-AN-A046
BRCA
TCGA
VTTTS
DEG_SPOP_SBC_1
0.1944
p.D242N
TCGA-FI-A2D5
UCEC
TCGA
VTTTS
DEG_SPOP_SBC_1
0.1944
p.D242N
DO1285
BRCA
ICGC
VTTTS
DEG_SPOP_SBC_1
0.1944
p.D242N
DO52365
LUSC
ICGC
VTTTS
DEG_SPOP_SBC_1
0.1944
p.D242N
DO41331
UCEC
ICGC
VTTTS
DEG_SPOP_SBC_1
0.1944
p.D242N
SIDM00267
Biliary Tract Carcinoma
GDSC
VTTTS
DEG_SPOP_SBC_1
0.1944
p.D242N
ACH-002312
Gallbladder Cancer
CCLE
VTTTS
DEG_SPOP_SBC_1
0.1944
p.D242N
TGBC24TKB
biliary_tract
COSMIC
VTTTS
DEG_SPOP_SBC_1
0.1944
p.R240H
TCGA-AN-A0AM
BRCA
TCGA
VTTTS
DEG_SPOP_SBC_1
0.25
p.R240H
TCGA-XM-AAZ1
THYM
TCGA
VTTTS
DEG_SPOP_SBC_1
0.25
p.R240H
DO4191
BRCA
ICGC
VTTTS
DEG_SPOP_SBC_1
0.25
p.R240H
DO35600
PBCA
ICGC
VTTTS
DEG_SPOP_SBC_1
0.25
p.R240H
SIDM02068
Esophageal Carcinoma
GDSC
VTTTS
DEG_SPOP_SBC_1
0.25
p.D242G
TCGA-AP-A056
UCEC
TCGA
VTTTS
DEG_SPOP_SBC_1
0.1944
p.D242G
DO43971
UCEC
ICGC
VTTTS
DEG_SPOP_SBC_1
0.1944
p.P246L
TCGA-AP-A1DV
UCEC
TCGA
VTTTS
DEG_SPOP_SBC_1
0.0833
p.P246S
TCGA-EE-A2M5
SKCM
TCGA
VTTTS
DEG_SPOP_SBC_1
0.0833
p.T236I
TCGA-EO-A22U
UCEC
TCGA
VTTTS
DEG_SPOP_SBC_1
0.7078
p.T236I
TCGA-VQ-A91K
STAD
TCGA
VTTTS
DEG_SPOP_SBC_1
0.7078
p.T236I
DO51785
STAD
ICGC
VTTTS
DEG_SPOP_SBC_1
0.7078
p.T236I
DO43755
UCEC
ICGC
VTTTS
DEG_SPOP_SBC_1
0.7078
p.T235M
TCGA-G4-6323
COAD
TCGA
VTTTS
DEG_SPOP_SBC_1
0.7423
p.T235M
DO9138
COAD
ICGC
VTTTS
DEG_SPOP_SBC_1
0.7423
p.Q225K
DO223588
BLCA
ICGC
VTTTS
DEG_SPOP_SBC_1
0.1111
p.A224T
DO9666
COAD
ICGC
VTTTS
DEG_SPOP_SBC_1
0.0833
p.G230R
DO222469
ESCA
ICGC
VTTTS
DEG_SPOP_SBC_1
0.25
p.S237N
DO233154
GACA
ICGC
VTTTS
DEG_SPOP_SBC_1
0.7069
p.S237N
DO23509
LIRI
ICGC
VTTTS
DEG_SPOP_SBC_1
0.7069
p.G232C
DO233766
GACA
ICGC
VTTTS
DEG_SPOP_SBC_1
0.3056
p.S244T
DO26890
LUSC
ICGC
VTTTS
DEG_SPOP_SBC_1
0.1389
p.L236M
DO26710
LUSC
ICGC
VTTTS
DEG_SPOP_SBC_1
0.711
p.S231F
DO222843
MELA
ICGC
VTTTS
DEG_SPOP_SBC_1
0.2778
p.S231F
DO51272
SKCM
ICGC
VTTTS
DEG_SPOP_SBC_1
0.2778
p.S231F
DO51269
SKCM
ICGC
VTTTS
DEG_SPOP_SBC_1
0.2778
p.G240D
DO38123
SKCM
ICGC
VTTTS
DEG_SPOP_SBC_1
0.25
p.S237G
DO229208
THCA
ICGC
VTTTS
DEG_SPOP_SBC_1
0.6993
p.A224V
DO42472
UCEC
ICGC
VTTTS
DEG_SPOP_SBC_1
0.0833
p.N238I
DO41379
UCEC
ICGC
VTTTS
DEG_SPOP_SBC_1
0.3056
p.V239I
SIDM00578
Neuroblastoma
GDSC
VTTTS
DEG_SPOP_SBC_1
0.2778
p.V239I
SIDM00233
T-Lymphoblastic Leukemia
GDSC
VTTTS
DEG_SPOP_SBC_1
0.2778
p.V239I
ATN-1
haematopoietic_and_lymphoid_tissue
COSMIC
VTTTS
DEG_SPOP_SBC_1
0.2778
p.L241I
SIDM00094
Kidney Carcinoma
GDSC
VTTTS
DEG_SPOP_SBC_1
0.2222
p.L241I
ACH-002199
Kidney Cancer
CCLE
VTTTS
DEG_SPOP_SBC_1
0.2222
p.L241I
SN12C
kidney
COSMIC
VTTTS
DEG_SPOP_SBC_1
0.2222
p.T223N
SIDM00939
Non-Small Cell Lung Carcinoma
GDSC
VTTTS
DEG_SPOP_SBC_1
0.0556
p.T223N
ACH-000826
Lung Cancer
CCLE
VTTTS
DEG_SPOP_SBC_1
0.0556
p.T223N
CAL-12T
lung
COSMIC
VTTTS
DEG_SPOP_SBC_1
0.0556
p.P246H
ACH-000901
Lung Cancer
CCLE
VTTTS
DEG_SPOP_SBC_1
0.0833
p.R224Q
U-87-MG
central_nervous_system
COSMIC
VTTTS
DEG_SPOP_SBC_1
0.0833
p.E239D
NCI-H2347
lung
COSMIC
VTTTS
DEG_SPOP_SBC_1
0.2778
p.R228M
NCI-H748
lung
COSMIC
VTTTS
DEG_SPOP_SBC_1
0.1944
Drug responses associated with SIGLEC8 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VTTTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P13646
Keratin, type I cytoskeletal 13
DEG_SPOP_SBC_1
433:437
VTTTS
SPOP
0.9542
More...
P13646
Keratin, type I cytoskeletal 13
DEG_SPOP_SBC_1
441:445
VTTTS
SPOP
0.8837
More...
P31629
Transcription factor HIVEP2
DEG_SPOP_SBC_1
440:444
VTTTS
SPOP
0.9813
More...
Q13469
Nuclear factor of activated T-cells, cytoplasmic 2
DEG_SPOP_SBC_1
484:488
VTTTS
SPOP
0.5226
More...
Q96FS4
Signal-induced proliferation-associated protein 1
DEG_SPOP_SBC_1
544:548
VTTTS
SPOP
0.9169
More...
Q9NYZ4
Sialic acid-binding Ig-like lectin 8
DEG_SPOP_SBC_1
233:237
VTTTS
SPOP
0.8068
More...
Q6ZU65
Ubinuclein-2
DEG_SPOP_SBC_1
1283:1287
VTTTS
SPOP
0.5985
More...