DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
AITSS
Uniprot ID:
Q5RL73
Source protein:
RNA-binding protein 48
Source gene:
RBM48
Class:
DEG_SPOP_SBC_1
Location:
264:268
E3 ligase:
SPOP
DEGRON score:
0.6026
ASA_SCORE:
64.92
COIL:
0.7766
CONS_SCORE:
0.3895
DSS_SCORE:
0.4712
HELIX:
0.1506
FCONS_SCORE:
0.9323
RIG_SCORE:
0.705
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R277G
TCGA-05-4410
LUAD
TCGA
AITSS
DEG_SPOP_SBC_1
0.0833
p.R277G
DO25426
LUAD
ICGC
AITSS
DEG_SPOP_SBC_1
0.0833
p.A270V
TCGA-AX-A1CE
UCEC
TCGA
AITSS
DEG_SPOP_SBC_1
0.2778
p.A270V
DO42280
UCEC
ICGC
AITSS
DEG_SPOP_SBC_1
0.2778
p.R273S
TCGA-D3-A5GT
SKCM
TCGA
AITSS
DEG_SPOP_SBC_1
0.1944
p.R273S
DO47677
SKCM
ICGC
AITSS
DEG_SPOP_SBC_1
0.1944
p.G260D
TCGA-DU-6407
LGG
TCGA
AITSS
DEG_SPOP_SBC_1
0.2222
p.G260D
DO22295
LGG
ICGC
AITSS
DEG_SPOP_SBC_1
0.2222
p.P259H
TCGA-EE-A29L
SKCM
TCGA
AITSS
DEG_SPOP_SBC_1
0.1944
p.P259H
TCGA-FS-A1Z0
SKCM
TCGA
AITSS
DEG_SPOP_SBC_1
0.1944
p.P259H
DO37835
SKCM
ICGC
AITSS
DEG_SPOP_SBC_1
0.1944
p.P259H
DO37431
SKCM
ICGC
AITSS
DEG_SPOP_SBC_1
0.1944
p.N254T
TCGA-IN-A6RL
STAD
TCGA
AITSS
DEG_SPOP_SBC_1
0.0556
p.N254T
DO51738
STAD
ICGC
AITSS
DEG_SPOP_SBC_1
0.0556
p.S268L
TCGA-XF-A9SM
BLCA
TCGA
AITSS
DEG_SPOP_SBC_1
0.7667
p.S268L
DO223597
BLCA
ICGC
AITSS
DEG_SPOP_SBC_1
0.7667
p.A264V
DO233179
GACA
ICGC
AITSS
DEG_SPOP_SBC_1
0.5825
p.A257V
SIDM02026
Colorectal Carcinoma
GDSC
AITSS
DEG_SPOP_SBC_1
0.1389
p.T278S
SIDM00777
Colorectal Carcinoma
GDSC
AITSS
DEG_SPOP_SBC_1
0.0556
p.T278S
ACH-000360
Colon/Colorectal Cancer
CCLE
AITSS
DEG_SPOP_SBC_1
0.0556
p.T278S
NCI-H508
large_intestine
COSMIC
AITSS
DEG_SPOP_SBC_1
0.0556
p.T266A
SIDM00498
Colorectal Carcinoma
GDSC
AITSS
DEG_SPOP_SBC_1
0.7139
p.T266A
ACH-000970
Colon/Colorectal Cancer
CCLE
AITSS
DEG_SPOP_SBC_1
0.7139
p.T266A
SNU-C5
large_intestine
COSMIC
AITSS
DEG_SPOP_SBC_1
0.7139
Drug responses associated with RBM48 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of AITSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
A8CG34
Nuclear envelope pore membrane protein POM 121C
DEG_SPOP_SBC_1
389:393
AITSS
SPOP
0.9987
More...
Q5RL73
RNA-binding protein 48
DEG_SPOP_SBC_1
264:268
AITSS
SPOP
0.6026
More...
Q8N1G0
Zinc finger protein 687
DEG_SPOP_SBC_1
639:643
AITSS
SPOP
0.9699
More...
Q96HA1
Nuclear envelope pore membrane protein POM 121
DEG_SPOP_SBC_1
412:416
AITSS
SPOP
0.9984
More...
Q9Y2F5
Little elongation complex subunit 1
DEG_SPOP_SBC_1
236:240
AITSS
SPOP
0.9901
More...
Q6ZVF9
G protein-regulated inducer of neurite outgrowth 3
DEG_SPOP_SBC_1
145:149
AITSS
SPOP
0.9606
More...