DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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CGC
Degron:
ARSTS
Uniprot ID:
Q9H3R0
Source protein:
Lysine-specific demethylase 4C
Source gene:
KDM4C
Class:
DEG_SPOP_SBC_1
Location:
376:380
E3 ligase:
SPOP
DEGRON score:
0.9041
ASA_SCORE:
104.68
COIL:
0.825
CONS_SCORE:
0.3015
DSS_SCORE:
0.5917
HELIX:
0.1646
FCONS_SCORE:
0.9814
RIG_SCORE:
0.6542
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.A376S
TCGA-50-5049
LUAD
TCGA
ARSTS
DEG_SPOP_SBC_1
0.7588
p.A376S
DO23705
LUAD
ICGC
ARSTS
DEG_SPOP_SBC_1
0.7588
p.K381I
TCGA-78-8662
LUAD
TCGA
ARSTS
DEG_SPOP_SBC_1
0.3056
p.K381I
DO45346
LUAD
ICGC
ARSTS
DEG_SPOP_SBC_1
0.3056
p.T379I
TCGA-B5-A11E
UCEC
TCGA
ARSTS
DEG_SPOP_SBC_1
0.7078
p.T379I
DO41644
UCEC
ICGC
ARSTS
DEG_SPOP_SBC_1
0.7078
p.E387D
TCGA-CR-7402
HNSC
TCGA
ARSTS
DEG_SPOP_SBC_1
0.1389
p.E387D
DO15727
HNSC
ICGC
ARSTS
DEG_SPOP_SBC_1
0.1389
p.R382S
TCGA-DX-A6YS
SARC
TCGA
ARSTS
DEG_SPOP_SBC_1
0.2778
p.R382S
DO220005
SARC
ICGC
ARSTS
DEG_SPOP_SBC_1
0.2778
p.R377M
TCGA-ER-A19P
SKCM
TCGA
ARSTS
DEG_SPOP_SBC_1
0.7521
p.R377M
DO47623
SKCM
ICGC
ARSTS
DEG_SPOP_SBC_1
0.7521
p.S370F
TCGA-FR-A8YC
SKCM
TCGA
ARSTS
DEG_SPOP_SBC_1
0.1667
p.S370F
DO50301
SKCM
ICGC
ARSTS
DEG_SPOP_SBC_1
0.1667
p.P383H
TCGA-G4-6588
COAD
TCGA
ARSTS
DEG_SPOP_SBC_1
0.25
p.P383H
DO10140
COAD
ICGC
ARSTS
DEG_SPOP_SBC_1
0.25
p.R371Q
DO222884
COCA
ICGC
ARSTS
DEG_SPOP_SBC_1
0.1944
p.A369S
SIDM00336
Melanoma
GDSC
ARSTS
DEG_SPOP_SBC_1
0.1389
p.A369S
ACH-000881
Skin Cancer
CCLE
ARSTS
DEG_SPOP_SBC_1
0.1389
p.A369S
MEL-JUSO
skin
COSMIC
ARSTS
DEG_SPOP_SBC_1
0.1389
p.F373L
SIDM01196
Hepatocellular Carcinoma
GDSC
ARSTS
DEG_SPOP_SBC_1
0.25
p.F373L
SIDM01564
Colorectal Carcinoma
GDSC
ARSTS
DEG_SPOP_SBC_1
0.25
p.F373L
SNU-475
liver
COSMIC
ARSTS
DEG_SPOP_SBC_1
0.25
p.A376V
SIDM01146
Gastric Carcinoma
GDSC
ARSTS
DEG_SPOP_SBC_1
0.5825
p.A376V
ACH-000932
Gastric Cancer
CCLE
ARSTS
DEG_SPOP_SBC_1
0.5825
p.A376V
NCI-SNU-1
stomach
COSMIC
ARSTS
DEG_SPOP_SBC_1
0.5825
p.D366E
NCI-H2066
lung
COSMIC
ARSTS
DEG_SPOP_SBC_1
0.0556
p.T371I
SUP-M2
haematopoietic_and_lymphoid_tissue
COSMIC
ARSTS
DEG_SPOP_SBC_1
0.1944
Drug responses associated with KDM4C mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of ARSTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O00409
Forkhead box protein N3
DEG_SPOP_SBC_1
345:349
ARSTS
SPOP
0.9829
More...
O14874
[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial
DEG_SPOP_SBC_1
29:33
ARSTS
SPOP
0.999
More...
Q6ZSM3
Monocarboxylate transporter 12
DEG_SPOP_SBC_1
37:41
ARSTS
SPOP
0.6242
More...
Q9H3R0
Lysine-specific demethylase 4C
DEG_SPOP_SBC_1
376:380
ARSTS
SPOP
0.9041
More...
Q9BXK1
Krueppel-like factor 16
DEG_SPOP_SBC_1
222:226
ARSTS
SPOP
0.9312
More...
Q8NET4
Retrotransposon Gag-like protein 9
DEG_SPOP_SBC_1
1026:1030
ARSTS
SPOP
0.702
More...