DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LKEND
Uniprot ID:
O15344
Source protein:
E3 ubiquitin-protein ligase Midline-1
Source gene:
MID1
Class:
DEG_APCC_KENBOX_2
Location:
320:324
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.7656
ASA_SCORE:
102.7
COIL:
0.7374
CONS_SCORE:
0.4046
DSS_SCORE:
0.3719
HELIX:
0.2528
FCONS_SCORE:
1.1162
RIG_SCORE:
0.7095
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S319T
TCGA-21-5782
LUSC
TCGA
LKEND
DEG_APCC_KENBOX_2
0.3056
p.S319T
DO27120
LUSC
ICGC
LKEND
DEG_APCC_KENBOX_2
0.3056
p.A332V
TCGA-A5-A0G2
UCEC
TCGA
LKEND
DEG_APCC_KENBOX_2
0.1111
p.A332V
DO41235
UCEC
ICGC
LKEND
DEG_APCC_KENBOX_2
0.1111
p.H325Y
TCGA-BR-6705
STAD
TCGA
LKEND
DEG_APCC_KENBOX_2
0.3056
p.H325Y
DO38835
STAD
ICGC
LKEND
DEG_APCC_KENBOX_2
0.3056
p.R327H
TCGA-EO-A3KU
UCEC
TCGA
LKEND
DEG_APCC_KENBOX_2
0.25
p.R327H
DO50079
UCEC
ICGC
LKEND
DEG_APCC_KENBOX_2
0.25
p.E322K
SW954
vulva
COSMIC
LKEND
DEG_APCC_KENBOX_2
0.7022
Drug responses associated with MID1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LKEND
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O15344
E3 ubiquitin-protein ligase Midline-1
DEG_APCC_KENBOX_2
320:324
LKEND
APC,CDC20,FZR1
0.7656
More...
P29374
AT-rich interactive domain-containing protein 4A
DEG_APCC_KENBOX_2
744:748
LKEND
APC,CDC20,FZR1
0.5299
More...
P46013
Proliferation marker protein Ki-67
DEG_APCC_KENBOX_2
938:942
LKEND
APC,CDC20,FZR1
0.9316
More...
Q12923
Tyrosine-protein phosphatase non-receptor type 13
DEG_APCC_KENBOX_2
1071:1075
LKEND
APC,CDC20,FZR1
0.9955
More...
Q14739
Delta
DEG_APCC_KENBOX_2
49:53
LKEND
APC,CDC20,FZR1
0.9324
More...
Q8NI35
InaD-like protein
DEG_APCC_KENBOX_2
179:183
LKEND
APC,CDC20,FZR1
0.9898
More...
Q92743
Serine protease HTRA1
DEG_APCC_KENBOX_2
428:432
LKEND
APC,CDC20,FZR1
0.9566
More...