DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
LKEND
Uniprot ID:
Q12923
Source protein:
Tyrosine-protein phosphatase non-receptor type 13
Source gene:
PTPN13
Class:
DEG_APCC_KENBOX_2
Location:
1071:1075
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9955
ASA_SCORE:
99.38
COIL:
0.7272
CONS_SCORE:
0.3422
DSS_SCORE:
0.4031
HELIX:
0.2196
FCONS_SCORE:
1.0215
RIG_SCORE:
0.7276
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.L1071V
TCGA-A5-A1OF
UCEC
TCGA
LKEND
DEG_APCC_KENBOX_2
0.5654
p.L1071V
DO42568
UCEC
ICGC
LKEND
DEG_APCC_KENBOX_2
0.5654
p.V1076G
TCGA-A5-A1OF
UCEC
TCGA
LKEND
DEG_APCC_KENBOX_2
0.3056
p.V1076G
DO42568
UCEC
ICGC
LKEND
DEG_APCC_KENBOX_2
0.3056
p.K1072Q
TCGA-AG-A002
READ
TCGA
LKEND
DEG_APCC_KENBOX_2
0.6944
p.S1085Y
TCGA-EO-A22R
UCEC
TCGA
LKEND
DEG_APCC_KENBOX_2
0.5
p.S1085Y
DO42713
UCEC
ICGC
LKEND
DEG_APCC_KENBOX_2
0.5
p.S1067F
TCGA-OD-A75X
SKCM
TCGA
LKEND
DEG_APCC_KENBOX_2
0.2222
p.S1067F
DO48601
SKCM
ICGC
LKEND
DEG_APCC_KENBOX_2
0.2222
p.S1082N
DO233107
GACA
ICGC
LKEND
DEG_APCC_KENBOX_2
0.5833
p.N1074H
DO233951
GACA
ICGC
LKEND
DEG_APCC_KENBOX_2
0.7423
p.V1069A
DO45265
LIRI
ICGC
LKEND
DEG_APCC_KENBOX_2
0.2778
p.V1069I
DO229177
LMS
ICGC
LKEND
DEG_APCC_KENBOX_2
0.2778
p.W1081C
ACH-001407
Bladder Cancer
CCLE
LKEND
DEG_APCC_KENBOX_2
0.1667
p.A1063T
COLO-668
lung
COSMIC
LKEND
DEG_APCC_KENBOX_2
0.1111
Drug responses associated with PTPN13 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LKEND
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O15344
E3 ubiquitin-protein ligase Midline-1
DEG_APCC_KENBOX_2
320:324
LKEND
APC,CDC20,FZR1
0.7656
More...
P29374
AT-rich interactive domain-containing protein 4A
DEG_APCC_KENBOX_2
744:748
LKEND
APC,CDC20,FZR1
0.5299
More...
P46013
Proliferation marker protein Ki-67
DEG_APCC_KENBOX_2
938:942
LKEND
APC,CDC20,FZR1
0.9316
More...
Q12923
Tyrosine-protein phosphatase non-receptor type 13
DEG_APCC_KENBOX_2
1071:1075
LKEND
APC,CDC20,FZR1
0.9955
More...
Q14739
Delta
DEG_APCC_KENBOX_2
49:53
LKEND
APC,CDC20,FZR1
0.9324
More...
Q8NI35
InaD-like protein
DEG_APCC_KENBOX_2
179:183
LKEND
APC,CDC20,FZR1
0.9898
More...
Q92743
Serine protease HTRA1
DEG_APCC_KENBOX_2
428:432
LKEND
APC,CDC20,FZR1
0.9566
More...