DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LKENS
Uniprot ID:
P28289
Source protein:
Tropomodulin-1
Source gene:
TMOD1
Class:
DEG_APCC_KENBOX_2
Location:
220:224
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.5457
ASA_SCORE:
62.28
COIL:
0.6134
CONS_SCORE:
0.5841
DSS_SCORE:
0.1135
HELIX:
0.3934
FCONS_SCORE:
0.991
RIG_SCORE:
0.8069
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.K221N
TCGA-AX-A05Z
UCEC
TCGA
LKENS
DEG_APCC_KENBOX_2
0.6918
p.K221N
DO40884
UCEC
ICGC
LKENS
DEG_APCC_KENBOX_2
0.6918
p.L220P
TCGA-HU-A4GT
STAD
TCGA
LKENS
DEG_APCC_KENBOX_2
0.6471
p.L220P
DO48020
STAD
ICGC
LKENS
DEG_APCC_KENBOX_2
0.6471
p.G233V
SIDM00388
B-Cell Non-Hodgkin's Lymphoma
GDSC
LKENS
DEG_APCC_KENBOX_2
0.0833
p.G233V
ACH-002272
Lymphoma
CCLE
LKENS
DEG_APCC_KENBOX_2
0.0833
p.G233V
MHH-PREB-1
haematopoietic_and_lymphoid_tissue
COSMIC
LKENS
DEG_APCC_KENBOX_2
0.0833
p.V212L
MC-IXC
autonomic_ganglia
COSMIC
LKENS
DEG_APCC_KENBOX_2
0.1111
Drug responses associated with TMOD1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LKENS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P28289
Tropomodulin-1
DEG_APCC_KENBOX_2
220:224
LKENS
APC,CDC20,FZR1
0.5457
More...
Q8TBJ5
Fez family zinc finger protein 2
DEG_APCC_KENBOX_2
246:250
LKENS
APC,CDC20,FZR1
0.938
More...
Q8TF72
Protein Shroom3
DEG_APCC_KENBOX_2
1710:1714
LKENS
APC,CDC20,FZR1
0.735
More...
Q9H1H9
Kinesin-like protein KIF13A
DEG_APCC_KENBOX_2
1669:1673
LKENS
APC,CDC20,FZR1
0.9972
More...
A7XYQ1
Sine oculis-binding protein homolog
DEG_APCC_KENBOX_2
77:81
LKENS
APC,CDC20,FZR1
0.9117
More...
Q5THK1
Protein PRR14L
DEG_APCC_KENBOX_2
336:340
LKENS
APC,CDC20,FZR1
0.998
More...