DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
PRTTT
Uniprot ID:
P11586
Source protein:
C-1-tetrahydrofolate synthase, cytoplasmic
Source gene:
MTHFD1
Class:
DEG_SPOP_SBC_1
Location:
73:77
E3 ligase:
SPOP
DEGRON score:
0.9103
ASA_SCORE:
80.5
COIL:
0.95
CONS_SCORE:
0.3679
DSS_SCORE:
0.2849
HELIX:
0.0124
FCONS_SCORE:
1.0157
RIG_SCORE:
0.7873
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.M82I
TCGA-66-2781
LUSC
TCGA
PRTTT
DEG_SPOP_SBC_1
0.1944
p.M82I
DO26422
LUSC
ICGC
PRTTT
DEG_SPOP_SBC_1
0.1944
p.S87C
TCGA-85-A4CL
LUSC
TCGA
PRTTT
DEG_SPOP_SBC_1
0.0556
p.S87C
DO45454
LUSC
ICGC
PRTTT
DEG_SPOP_SBC_1
0.0556
p.S79F
TCGA-A5-A2K5
UCEC
TCGA
PRTTT
DEG_SPOP_SBC_1
0.2778
p.S79F
TCGA-DU-6392
LGG
TCGA
PRTTT
DEG_SPOP_SBC_1
0.2778
p.S79F
DO22237
LGG
ICGC
PRTTT
DEG_SPOP_SBC_1
0.2778
p.S79F
DO41379
UCEC
ICGC
PRTTT
DEG_SPOP_SBC_1
0.2778
p.S79C
TCGA-C8-A274
BRCA
TCGA
PRTTT
DEG_SPOP_SBC_1
0.2778
p.S79C
DO5675
BRCA
ICGC
PRTTT
DEG_SPOP_SBC_1
0.2778
p.T76I
TCGA-EE-A2MR
SKCM
TCGA
PRTTT
DEG_SPOP_SBC_1
0.8189
p.T76I
DO37819
SKCM
ICGC
PRTTT
DEG_SPOP_SBC_1
0.8189
p.E80G
SIDM00217
Colorectal Carcinoma
GDSC
PRTTT
DEG_SPOP_SBC_1
0.25
p.E80G
SNU-1040
large_intestine
COSMIC
PRTTT
DEG_SPOP_SBC_1
0.25
p.K77E
ACH-000166
Leukemia
CCLE
PRTTT
DEG_SPOP_SBC_1
0.7022
p.Q82L
ACH-002282
Neuroblastoma
CCLE
PRTTT
DEG_SPOP_SBC_1
0.1944
p.Q82L
NB17
autonomic_ganglia
COSMIC
PRTTT
DEG_SPOP_SBC_1
0.1944
p.Q82H
ACH-002282
Neuroblastoma
CCLE
PRTTT
DEG_SPOP_SBC_1
0.1944
p.Q82H
NB17
autonomic_ganglia
COSMIC
PRTTT
DEG_SPOP_SBC_1
0.1944
Drug responses associated with MTHFD1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PRTTT
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O00743
Serine/threonine-protein phosphatase 6 catalytic subunit
DEG_SPOP_SBC_1
297:301
PRTTT
SPOP
0.843
More...
O14490
Disks large-associated protein 1
DEG_SPOP_SBC_1
547:551
PRTTT
SPOP
0.9897
More...
P11586
C-1-tetrahydrofolate synthase, cytoplasmic
DEG_SPOP_SBC_1
73:77
PRTTT
SPOP
0.9103
More...
Q685J3
Mucin-17
DEG_SPOP_SBC_1
4130:4134
PRTTT
SPOP
0.638
More...
Q6UXF1
Transmembrane protein 108
DEG_SPOP_SBC_1
158:162
PRTTT
SPOP
0.8778
More...
Q76N32
Centrosomal protein of 68 kDa
DEG_SPOP_SBC_1
138:142
PRTTT
SPOP
0.6495
More...