DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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CGC
Degron:
PTPPPS
Uniprot ID:
Q16204
Source protein:
Coiled-coil domain-containing protein 6
Source gene:
CCDC6
Class:
DEG_SCF_FBW7_1
Location:
426:431
E3 ligase:
FBXW7
DEGRON score:
0.9778
ASA_SCORE:
91
COIL:
0.9857
CONS_SCORE:
0.3675
DSS_SCORE:
0.9007
HELIX:
0.0062
FCONS_SCORE:
1.0504
RIG_SCORE:
0.4239
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.F423I
TCGA-AA-3947
COAD
TCGA
PTPPPS
DEG_SCF_FBW7_1
0.25
p.F423I
DO8192
COAD
ICGC
PTPPPS
DEG_SCF_FBW7_1
0.25
p.R425W
TCGA-EW-A1J3
BRCA
TCGA
PTPPPS
DEG_SCF_FBW7_1
0.3056
p.R425W
DO3049
BRCA
ICGC
PTPPPS
DEG_SCF_FBW7_1
0.3056
p.T427M
TCGA-IN-A6RP
STAD
TCGA
PTPPPS
DEG_SCF_FBW7_1
0.8534
p.T427M
DO51741
STAD
ICGC
PTPPPS
DEG_SCF_FBW7_1
0.8534
p.F423L
TCGA-LN-A49W
ESCA
TCGA
PTPPPS
DEG_SCF_FBW7_1
0.25
p.P437T
DO227802
COCA
ICGC
PTPPPS
DEG_SCF_FBW7_1
0.1667
p.P440T
DO229026
LICA
ICGC
PTPPPS
DEG_SCF_FBW7_1
0.0833
p.P420L
DO220851
MELA
ICGC
PTPPPS
DEG_SCF_FBW7_1
0.1667
p.P430L
DO220907
MELA
ICGC
PTPPPS
DEG_SCF_FBW7_1
0.6471
p.R425P
DO218849
SKCA
ICGC
PTPPPS
DEG_SCF_FBW7_1
0.3056
Drug responses associated with CCDC6 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PTPPPS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O95400
CD2 antigen cytoplasmic tail-binding protein 2
DEG_SCF_FBW7_1
242:247
PTPPPS
FBXW7
0.9792
More...
Q16204
Coiled-coil domain-containing protein 6
DEG_SCF_FBW7_1
426:431
PTPPPS
FBXW7
0.9778
More...
Q8IWN7
Retinitis pigmentosa 1-like 1 protein
DEG_SCF_FBW7_1
2277:2282
PTPPPS
FBXW7
0.9965
More...
Q8NEM7
Transcription factor SPT20 homolog
DEG_SCF_FBW7_1
493:498
PTPPPS
FBXW7
0.9821
More...
Q9HC35
Echinoderm microtubule-associated protein-like 4
DEG_SCF_FBW7_1
898:903
PTPPPS
FBXW7
0.9906
More...
Q5VZ46
Uncharacterized protein KIAA1614
DEG_SCF_FBW7_1
808:813
PTPPPS
FBXW7
0.9846
More...