DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
PTPPPS
Uniprot ID:
Q9HC35
Source protein:
Echinoderm microtubule-associated protein-like 4
Source gene:
EML4
Class:
DEG_SCF_FBW7_1
Location:
898:903
E3 ligase:
FBXW7
DEGRON score:
0.9906
ASA_SCORE:
84.4833
COIL:
0.9697
CONS_SCORE:
0.5212
DSS_SCORE:
0.7888
HELIX:
0.0157
FCONS_SCORE:
1.0079
RIG_SCORE:
0.5563
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.Q894K
TCGA-AG-3896
READ
TCGA
PTPPPS
DEG_SCF_FBW7_1
0.2222
p.T897A
TCGA-B5-A11E
UCEC
TCGA
PTPPPS
DEG_SCF_FBW7_1
0.75
p.P900L
TCGA-BK-A0C9
UCEC
TCGA
PTPPPS
DEG_SCF_FBW7_1
0.7582
p.P900R
TCGA-CN-5355
HNSC
TCGA
PTPPPS
DEG_SCF_FBW7_1
0.7512
p.E911K
TCGA-DD-AADJ
LIHC
TCGA
PTPPPS
DEG_SCF_FBW7_1
0.1111
p.N907S
TCGA-L5-A43J
ESCA
TCGA
PTPPPS
DEG_SCF_FBW7_1
0.2222
p.N907S
TCGA-LN-A7HV
ESCA
TCGA
PTPPPS
DEG_SCF_FBW7_1
0.2222
p.L912I
DO2813
BRCA
ICGC
PTPPPS
DEG_SCF_FBW7_1
0.0833
p.E898V
DO1251
BRCA
ICGC
PTPPPS
DEG_SCF_FBW7_1
0.7693
p.V892I
SIDM01263
T-Lymphoblastic Leukemia
GDSC
PTPPPS
DEG_SCF_FBW7_1
0.1667
p.L912R
SNU-398
liver
COSMIC
PTPPPS
DEG_SCF_FBW7_1
0.0833
Drug responses associated with EML4 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PTPPPS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O95400
CD2 antigen cytoplasmic tail-binding protein 2
DEG_SCF_FBW7_1
242:247
PTPPPS
FBXW7
0.9792
More...
Q16204
Coiled-coil domain-containing protein 6
DEG_SCF_FBW7_1
426:431
PTPPPS
FBXW7
0.9778
More...
Q8IWN7
Retinitis pigmentosa 1-like 1 protein
DEG_SCF_FBW7_1
2277:2282
PTPPPS
FBXW7
0.9965
More...
Q8NEM7
Transcription factor SPT20 homolog
DEG_SCF_FBW7_1
493:498
PTPPPS
FBXW7
0.9821
More...
Q9HC35
Echinoderm microtubule-associated protein-like 4
DEG_SCF_FBW7_1
898:903
PTPPPS
FBXW7
0.9906
More...
Q5VZ46
Uncharacterized protein KIAA1614
DEG_SCF_FBW7_1
808:813
PTPPPS
FBXW7
0.9846
More...