DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
PTPPPS
Uniprot ID:
Q8IWN7
Source protein:
Retinitis pigmentosa 1-like 1 protein
Source gene:
RP1L1
Class:
DEG_SCF_FBW7_1
Location:
2277:2282
E3 ligase:
FBXW7
DEGRON score:
0.9965
ASA_SCORE:
97.9167
COIL:
0.9783
CONS_SCORE:
0.4758
DSS_SCORE:
0.9444
HELIX:
0.0075
FCONS_SCORE:
1.2232
RIG_SCORE:
0.4213
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.P2273T
TCGA-44-7670
LUAD
TCGA
PTPPPS
DEG_SCF_FBW7_1
0.2222
p.P2273T
DO23555
LUAD
ICGC
PTPPPS
DEG_SCF_FBW7_1
0.2222
p.P2283Q
TCGA-69-7974
LUAD
TCGA
PTPPPS
DEG_SCF_FBW7_1
0.3056
p.P2283Q
DO23850
LUAD
ICGC
PTPPPS
DEG_SCF_FBW7_1
0.3056
p.P2277H
TCGA-AA-3833
COAD
TCGA
PTPPPS
DEG_SCF_FBW7_1
0.7694
p.P2277H
DO9796
COAD
ICGC
PTPPPS
DEG_SCF_FBW7_1
0.7694
p.P2277S
TCGA-AA-3864
COAD
TCGA
PTPPPS
DEG_SCF_FBW7_1
0.6752
p.P2277S
DO8490
COAD
ICGC
PTPPPS
DEG_SCF_FBW7_1
0.6752
p.R2276M
TCGA-AP-A059
UCEC
TCGA
PTPPPS
DEG_SCF_FBW7_1
0.3056
p.R2276M
DO41361
UCEC
ICGC
PTPPPS
DEG_SCF_FBW7_1
0.3056
p.P2288L
TCGA-EE-A2GJ
SKCM
TCGA
PTPPPS
DEG_SCF_FBW7_1
0.1667
p.P2288L
DO37746
SKCM
ICGC
PTPPPS
DEG_SCF_FBW7_1
0.1667
p.G2285R
DO222990
BTCA
ICGC
PTPPPS
DEG_SCF_FBW7_1
0.25
p.G2285R
DO229013
COCA
ICGC
PTPPPS
DEG_SCF_FBW7_1
0.25
p.G2285R
DO229016
COCA
ICGC
PTPPPS
DEG_SCF_FBW7_1
0.25
p.G2285R
DO229005
COCA
ICGC
PTPPPS
DEG_SCF_FBW7_1
0.25
p.P2279L
DO222702
MELA
ICGC
PTPPPS
DEG_SCF_FBW7_1
0.7582
p.P2271R
SIDM00985
Burkitt's Lymphoma
GDSC
PTPPPS
DEG_SCF_FBW7_1
0.1667
p.P2271R
SIDM00258
Neuroblastoma
GDSC
PTPPPS
DEG_SCF_FBW7_1
0.1667
p.P2271R
SIDM00127
Oral Cavity Carcinoma
GDSC
PTPPPS
DEG_SCF_FBW7_1
0.1667
p.P2271R
SIDM01055
Glioblastoma
GDSC
PTPPPS
DEG_SCF_FBW7_1
0.1667
p.P2271R
SIDM00983
Bladder Carcinoma
GDSC
PTPPPS
DEG_SCF_FBW7_1
0.1667
p.P2271R
SIDM00182
Head and Neck Carcinoma
GDSC
PTPPPS
DEG_SCF_FBW7_1
0.1667
p.S2282F
SIDM00650
Small Cell Lung Carcinoma
GDSC
PTPPPS
DEG_SCF_FBW7_1
0.7982
p.S2282F
SIDM01681
Non-Cancerous
GDSC
PTPPPS
DEG_SCF_FBW7_1
0.7982
p.P2292S
ACH-001275
Sarcoma
CCLE
PTPPPS
DEG_SCF_FBW7_1
0.0556
Drug responses associated with RP1L1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PTPPPS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O95400
CD2 antigen cytoplasmic tail-binding protein 2
DEG_SCF_FBW7_1
242:247
PTPPPS
FBXW7
0.9792
More...
Q16204
Coiled-coil domain-containing protein 6
DEG_SCF_FBW7_1
426:431
PTPPPS
FBXW7
0.9778
More...
Q8IWN7
Retinitis pigmentosa 1-like 1 protein
DEG_SCF_FBW7_1
2277:2282
PTPPPS
FBXW7
0.9965
More...
Q8NEM7
Transcription factor SPT20 homolog
DEG_SCF_FBW7_1
493:498
PTPPPS
FBXW7
0.9821
More...
Q9HC35
Echinoderm microtubule-associated protein-like 4
DEG_SCF_FBW7_1
898:903
PTPPPS
FBXW7
0.9906
More...
Q5VZ46
Uncharacterized protein KIAA1614
DEG_SCF_FBW7_1
808:813
PTPPPS
FBXW7
0.9846
More...