DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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CGC
Degron:
RKENA
Uniprot ID:
A4FU28
Source protein:
cTAGE family member 9
Source gene:
CTAGE9
Class:
DEG_APCC_KENBOX_2
Location:
480:484
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.638
ASA_SCORE:
99.14
COIL:
0.1054
CONS_SCORE:
0.8051
DSS_SCORE:
0.5111
HELIX:
0.8968
FCONS_SCORE:
1.1172
RIG_SCORE:
0.692
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.A484D
TCGA-A5-A2K5
UCEC
TCGA
RKENA
DEG_APCC_KENBOX_2
0.6682
p.A484D
DO41379
UCEC
ICGC
RKENA
DEG_APCC_KENBOX_2
0.6682
p.L490I
TCGA-D3-A8GM
SKCM
TCGA
RKENA
DEG_APCC_KENBOX_2
0.1667
p.L490I
DO50288
SKCM
ICGC
RKENA
DEG_APCC_KENBOX_2
0.1667
p.E492K
TCGA-LP-A5U2
CESC
TCGA
RKENA
DEG_APCC_KENBOX_2
0.1111
p.E492K
DO51610
CESC
ICGC
RKENA
DEG_APCC_KENBOX_2
0.1111
p.R470Q
DO229218
THCA
ICGC
RKENA
DEG_APCC_KENBOX_2
0.0556
p.R470Q
SIDM00596
Endometrial Carcinoma
GDSC
RKENA
DEG_APCC_KENBOX_2
0.0556
p.R470W
SIDM00118
Colorectal Carcinoma
GDSC
RKENA
DEG_APCC_KENBOX_2
0.0556
Drug responses associated with CTAGE9 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of RKENA
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O00425
Insulin-like growth factor 2 mRNA-binding protein 3
DEG_APCC_KENBOX_2
233:237
RKENA
APC,CDC20,FZR1
0.9305
More...
P35251
Replication factor C subunit 1
DEG_APCC_KENBOX_2
340:344
RKENA
APC,CDC20,FZR1
0.8832
More...
Q5JTC6
APC membrane recruitment protein 1
DEG_APCC_KENBOX_2
225:229
RKENA
APC,CDC20,FZR1
0.9975
More...
Q9NZI8
Insulin-like growth factor 2 mRNA-binding protein 1
DEG_APCC_KENBOX_2
233:237
RKENA
APC,CDC20,FZR1
0.932
More...
A4FU28
cTAGE family member 9
DEG_APCC_KENBOX_2
480:484
RKENA
APC,CDC20,FZR1
0.638
More...
P0CG41
cTAGE family member 8
DEG_APCC_KENBOX_2
480:484
RKENA
APC,CDC20,FZR1
0.6456
More...
Q86UF2
cTAGE family member 6
DEG_APCC_KENBOX_2
480:484
RKENA
APC,CDC20,FZR1
0.6768
More...
Q8IX94
cTAGE family member 4
DEG_APCC_KENBOX_2
480:484
RKENA
APC,CDC20,FZR1
0.6456
More...