DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
RKENA
Uniprot ID:
O00425
Source protein:
Insulin-like growth factor 2 mRNA-binding protein 3
Source gene:
IGF2BP3
Class:
DEG_APCC_KENBOX_2
Location:
233:237
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9305
ASA_SCORE:
115.08
COIL:
0.8514
CONS_SCORE:
0.5783
DSS_SCORE:
0.4564
HELIX:
0.0718
FCONS_SCORE:
0.9591
RIG_SCORE:
0.7405
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.A237V
TCGA-A5-A0G2
UCEC
TCGA
RKENA
DEG_APCC_KENBOX_2
0.5825
p.A237V
TCGA-AG-A002
READ
TCGA
RKENA
DEG_APCC_KENBOX_2
0.5825
p.A237V
TCGA-EO-A22U
UCEC
TCGA
RKENA
DEG_APCC_KENBOX_2
0.5825
p.A237V
DO234230
ESAD
ICGC
RKENA
DEG_APCC_KENBOX_2
0.5825
p.A237V
DO233115
GACA
ICGC
RKENA
DEG_APCC_KENBOX_2
0.5825
p.A237V
DO41235
UCEC
ICGC
RKENA
DEG_APCC_KENBOX_2
0.5825
p.A237V
DO43755
UCEC
ICGC
RKENA
DEG_APCC_KENBOX_2
0.5825
p.A240D
TCGA-AA-A010
COAD
TCGA
RKENA
DEG_APCC_KENBOX_2
0.25
p.Q224H
TCGA-AA-A024
COAD
TCGA
RKENA
DEG_APCC_KENBOX_2
0.0833
p.S227C
TCGA-E5-A2PC
BLCA
TCGA
RKENA
DEG_APCC_KENBOX_2
0.1667
p.S227C
DO702
BLCA
ICGC
RKENA
DEG_APCC_KENBOX_2
0.1667
p.H232N
DO228948
LICA
ICGC
RKENA
DEG_APCC_KENBOX_2
0.3056
p.T225N
DO229015
LICA
ICGC
RKENA
DEG_APCC_KENBOX_2
0.1111
p.R233H
DO35083
PACA
ICGC
RKENA
DEG_APCC_KENBOX_2
0.7133
p.K228I
SIDM00387
Neuroblastoma
GDSC
RKENA
DEG_APCC_KENBOX_2
0.6389
p.K228I
MHH-NB-11
autonomic_ganglia
COSMIC
RKENA
DEG_APCC_KENBOX_2
0.6389
Drug responses associated with IGF2BP3 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of RKENA
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O00425
Insulin-like growth factor 2 mRNA-binding protein 3
DEG_APCC_KENBOX_2
233:237
RKENA
APC,CDC20,FZR1
0.9305
More...
P35251
Replication factor C subunit 1
DEG_APCC_KENBOX_2
340:344
RKENA
APC,CDC20,FZR1
0.8832
More...
Q5JTC6
APC membrane recruitment protein 1
DEG_APCC_KENBOX_2
225:229
RKENA
APC,CDC20,FZR1
0.9975
More...
Q9NZI8
Insulin-like growth factor 2 mRNA-binding protein 1
DEG_APCC_KENBOX_2
233:237
RKENA
APC,CDC20,FZR1
0.932
More...
A4FU28
cTAGE family member 9
DEG_APCC_KENBOX_2
480:484
RKENA
APC,CDC20,FZR1
0.638
More...
P0CG41
cTAGE family member 8
DEG_APCC_KENBOX_2
480:484
RKENA
APC,CDC20,FZR1
0.6456
More...
Q86UF2
cTAGE family member 6
DEG_APCC_KENBOX_2
480:484
RKENA
APC,CDC20,FZR1
0.6768
More...
Q8IX94
cTAGE family member 4
DEG_APCC_KENBOX_2
480:484
RKENA
APC,CDC20,FZR1
0.6456
More...