DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
RKENA
Uniprot ID:
P35251
Source protein:
Replication factor C subunit 1
Source gene:
RFC1
Class:
DEG_APCC_KENBOX_2
Location:
340:344
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.8832
ASA_SCORE:
105.3
COIL:
0.5526
CONS_SCORE:
0.2397
DSS_SCORE:
0.5406
HELIX:
0.4224
FCONS_SCORE:
0.9923
RIG_SCORE:
0.7168
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.Y330S
TCGA-55-8097
LUAD
TCGA
RKENA
DEG_APCC_KENBOX_2
0.0556
p.Y330S
DO25699
LUAD
ICGC
RKENA
DEG_APCC_KENBOX_2
0.0556
p.S338L
TCGA-AA-3949
COAD
TCGA
RKENA
DEG_APCC_KENBOX_2
0.2778
p.S338L
DO7798
COAD
ICGC
RKENA
DEG_APCC_KENBOX_2
0.2778
p.S338P
TCGA-AP-A1DH
UCEC
TCGA
RKENA
DEG_APCC_KENBOX_2
0.2778
p.S338P
DO43995
UCEC
ICGC
RKENA
DEG_APCC_KENBOX_2
0.2778
p.P354A
TCGA-BC-A10U
LIHC
TCGA
RKENA
DEG_APCC_KENBOX_2
0.0556
p.P354A
DO22926
LIHC
ICGC
RKENA
DEG_APCC_KENBOX_2
0.0556
p.A337T
TCGA-F5-6814
READ
TCGA
RKENA
DEG_APCC_KENBOX_2
0.25
p.A337T
DO36556
READ
ICGC
RKENA
DEG_APCC_KENBOX_2
0.25
p.K346R
SIDM00454
Rhabdomyosarcoma
GDSC
RKENA
DEG_APCC_KENBOX_2
0.2778
p.K346R
SIDM01590
Breast Carcinoma
GDSC
RKENA
DEG_APCC_KENBOX_2
0.2778
Drug responses associated with RFC1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of RKENA
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O00425
Insulin-like growth factor 2 mRNA-binding protein 3
DEG_APCC_KENBOX_2
233:237
RKENA
APC,CDC20,FZR1
0.9305
More...
P35251
Replication factor C subunit 1
DEG_APCC_KENBOX_2
340:344
RKENA
APC,CDC20,FZR1
0.8832
More...
Q5JTC6
APC membrane recruitment protein 1
DEG_APCC_KENBOX_2
225:229
RKENA
APC,CDC20,FZR1
0.9975
More...
Q9NZI8
Insulin-like growth factor 2 mRNA-binding protein 1
DEG_APCC_KENBOX_2
233:237
RKENA
APC,CDC20,FZR1
0.932
More...
A4FU28
cTAGE family member 9
DEG_APCC_KENBOX_2
480:484
RKENA
APC,CDC20,FZR1
0.638
More...
P0CG41
cTAGE family member 8
DEG_APCC_KENBOX_2
480:484
RKENA
APC,CDC20,FZR1
0.6456
More...
Q86UF2
cTAGE family member 6
DEG_APCC_KENBOX_2
480:484
RKENA
APC,CDC20,FZR1
0.6768
More...
Q8IX94
cTAGE family member 4
DEG_APCC_KENBOX_2
480:484
RKENA
APC,CDC20,FZR1
0.6456
More...