DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
RKENA
Uniprot ID:
Q5JTC6
Source protein:
APC membrane recruitment protein 1
Source gene:
AMER1
Class:
DEG_APCC_KENBOX_2
Location:
225:229
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9975
ASA_SCORE:
113.14
COIL:
0.7904
CONS_SCORE:
0.6302
DSS_SCORE:
0.7635
HELIX:
0.1718
FCONS_SCORE:
1.215
RIG_SCORE:
0.5958
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.A223D
TCGA-12-0778
GBM
TCGA
RKENA
DEG_APCC_KENBOX_2
0.2778
p.A223D
DO11411
GBM
ICGC
RKENA
DEG_APCC_KENBOX_2
0.2778
p.P215S
TCGA-AD-6895
COAD
TCGA
RKENA
DEG_APCC_KENBOX_2
0.0556
p.P215S
DO8938
COAD
ICGC
RKENA
DEG_APCC_KENBOX_2
0.0556
p.R225I
TCGA-AG-A002
READ
TCGA
RKENA
DEG_APCC_KENBOX_2
0.6991
p.P235T
TCGA-AP-A059
UCEC
TCGA
RKENA
DEG_APCC_KENBOX_2
0.1667
p.P235T
DO41361
UCEC
ICGC
RKENA
DEG_APCC_KENBOX_2
0.1667
p.P224T
TCGA-B5-A1MX
UCEC
TCGA
RKENA
DEG_APCC_KENBOX_2
0.3056
p.P224T
DO41999
UCEC
ICGC
RKENA
DEG_APCC_KENBOX_2
0.3056
p.E227K
TCGA-BF-AAP7
SKCM
TCGA
RKENA
DEG_APCC_KENBOX_2
0.7022
p.E227K
TCGA-EE-A182
SKCM
TCGA
RKENA
DEG_APCC_KENBOX_2
0.7022
p.E227K
DO37814
SKCM
ICGC
RKENA
DEG_APCC_KENBOX_2
0.7022
p.E227K
DO219472
SKCM
ICGC
RKENA
DEG_APCC_KENBOX_2
0.7022
p.E227K
SIDM00663
Melanoma
GDSC
RKENA
DEG_APCC_KENBOX_2
0.7022
p.E227K
ACH-000814
Skin Cancer
CCLE
RKENA
DEG_APCC_KENBOX_2
0.7022
p.E227K
Hs939-T
skin
COSMIC
RKENA
DEG_APCC_KENBOX_2
0.7022
p.K238N
DO233906
GACA
ICGC
RKENA
DEG_APCC_KENBOX_2
0.1944
p.P224S
DO220906
MELA
ICGC
RKENA
DEG_APCC_KENBOX_2
0.3056
p.D233G
SIDM01002
Breast Carcinoma
GDSC
RKENA
DEG_APCC_KENBOX_2
0.2222
p.D233G
ACH-000117
Breast Cancer
CCLE
RKENA
DEG_APCC_KENBOX_2
0.2222
p.D233G
EFM-192A
breast
COSMIC
RKENA
DEG_APCC_KENBOX_2
0.2222
p.A229V
SIDM00585
Hepatocellular Carcinoma
GDSC
RKENA
DEG_APCC_KENBOX_2
0.5825
p.A229V
ACH-000480
Liver Cancer
CCLE
RKENA
DEG_APCC_KENBOX_2
0.5825
p.A229V
HuH-7
liver
COSMIC
RKENA
DEG_APCC_KENBOX_2
0.5825
p.R225S
SIDM00150
Colorectal Carcinoma
GDSC
RKENA
DEG_APCC_KENBOX_2
0.6316
p.R225S
ACH-000969
Colon/Colorectal Cancer
CCLE
RKENA
DEG_APCC_KENBOX_2
0.6316
p.R225S
KM12
large_intestine
COSMIC
RKENA
DEG_APCC_KENBOX_2
0.6316
p.P224H
ACH-001145
Ovarian Cancer
CCLE
RKENA
DEG_APCC_KENBOX_2
0.3056
Drug responses associated with AMER1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of RKENA
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O00425
Insulin-like growth factor 2 mRNA-binding protein 3
DEG_APCC_KENBOX_2
233:237
RKENA
APC,CDC20,FZR1
0.9305
More...
P35251
Replication factor C subunit 1
DEG_APCC_KENBOX_2
340:344
RKENA
APC,CDC20,FZR1
0.8832
More...
Q5JTC6
APC membrane recruitment protein 1
DEG_APCC_KENBOX_2
225:229
RKENA
APC,CDC20,FZR1
0.9975
More...
Q9NZI8
Insulin-like growth factor 2 mRNA-binding protein 1
DEG_APCC_KENBOX_2
233:237
RKENA
APC,CDC20,FZR1
0.932
More...
A4FU28
cTAGE family member 9
DEG_APCC_KENBOX_2
480:484
RKENA
APC,CDC20,FZR1
0.638
More...
P0CG41
cTAGE family member 8
DEG_APCC_KENBOX_2
480:484
RKENA
APC,CDC20,FZR1
0.6456
More...
Q86UF2
cTAGE family member 6
DEG_APCC_KENBOX_2
480:484
RKENA
APC,CDC20,FZR1
0.6768
More...
Q8IX94
cTAGE family member 4
DEG_APCC_KENBOX_2
480:484
RKENA
APC,CDC20,FZR1
0.6456
More...