DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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CGC
Degron:
RKENA
Uniprot ID:
Q9NZI8
Source protein:
Insulin-like growth factor 2 mRNA-binding protein 1
Source gene:
IGF2BP1
Class:
DEG_APCC_KENBOX_2
Location:
233:237
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.932
ASA_SCORE:
115.96
COIL:
0.8336
CONS_SCORE:
0.5132
DSS_SCORE:
0.4722
HELIX:
0.0712
FCONS_SCORE:
0.8649
RIG_SCORE:
0.73
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.A237V
TCGA-99-8033
LUAD
TCGA
RKENA
DEG_APCC_KENBOX_2
0.5825
p.A237V
DO23726
LUAD
ICGC
RKENA
DEG_APCC_KENBOX_2
0.5825
p.A237T
TCGA-AG-A002
READ
TCGA
RKENA
DEG_APCC_KENBOX_2
0.6028
p.A237T
SIDM00680
Colorectal Carcinoma
GDSC
RKENA
DEG_APCC_KENBOX_2
0.6028
p.A237T
SIDM00327
Hodgkin's Lymphoma
GDSC
RKENA
DEG_APCC_KENBOX_2
0.6028
p.A237T
ACH-000754
Lymphoma
CCLE
RKENA
DEG_APCC_KENBOX_2
0.6028
p.A237T
ACH-000957
Colon/Colorectal Cancer
CCLE
RKENA
DEG_APCC_KENBOX_2
0.6028
p.A237T
LS-180
large_intestine
COSMIC
RKENA
DEG_APCC_KENBOX_2
0.6028
p.A237T
L-428
haematopoietic_and_lymphoid_tissue
COSMIC
RKENA
DEG_APCC_KENBOX_2
0.6028
p.K228E
TCGA-B5-A5OC
UCEC
TCGA
RKENA
DEG_APCC_KENBOX_2
0.6389
p.K228E
DO52405
UCEC
ICGC
RKENA
DEG_APCC_KENBOX_2
0.6389
p.A240T
TCGA-B6-A0I2
BRCA
TCGA
RKENA
DEG_APCC_KENBOX_2
0.25
p.A240T
DO1885
BRCA
ICGC
RKENA
DEG_APCC_KENBOX_2
0.25
p.D230E
TCGA-OR-A5KT
ACC
TCGA
RKENA
DEG_APCC_KENBOX_2
0.25
p.A240D
DO227745
COCA
ICGC
RKENA
DEG_APCC_KENBOX_2
0.25
p.I229K
DO228585
LICA
ICGC
RKENA
DEG_APCC_KENBOX_2
0.2222
p.R233K
SIDM00140
Melanoma
GDSC
RKENA
DEG_APCC_KENBOX_2
0.6126
p.R233K
ACH-000968
Skin Cancer
CCLE
RKENA
DEG_APCC_KENBOX_2
0.6126
p.R233K
COLO-792
skin
COSMIC
RKENA
DEG_APCC_KENBOX_2
0.6126
p.H224R
Sarc9371
bone
COSMIC
RKENA
DEG_APCC_KENBOX_2
0.0833
Drug responses associated with IGF2BP1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of RKENA
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O00425
Insulin-like growth factor 2 mRNA-binding protein 3
DEG_APCC_KENBOX_2
233:237
RKENA
APC,CDC20,FZR1
0.9305
More...
P35251
Replication factor C subunit 1
DEG_APCC_KENBOX_2
340:344
RKENA
APC,CDC20,FZR1
0.8832
More...
Q5JTC6
APC membrane recruitment protein 1
DEG_APCC_KENBOX_2
225:229
RKENA
APC,CDC20,FZR1
0.9975
More...
Q9NZI8
Insulin-like growth factor 2 mRNA-binding protein 1
DEG_APCC_KENBOX_2
233:237
RKENA
APC,CDC20,FZR1
0.932
More...
A4FU28
cTAGE family member 9
DEG_APCC_KENBOX_2
480:484
RKENA
APC,CDC20,FZR1
0.638
More...
P0CG41
cTAGE family member 8
DEG_APCC_KENBOX_2
480:484
RKENA
APC,CDC20,FZR1
0.6456
More...
Q86UF2
cTAGE family member 6
DEG_APCC_KENBOX_2
480:484
RKENA
APC,CDC20,FZR1
0.6768
More...
Q8IX94
cTAGE family member 4
DEG_APCC_KENBOX_2
480:484
RKENA
APC,CDC20,FZR1
0.6456
More...