DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
SKENG
Uniprot ID:
P35125
Source protein:
Ubiquitin carboxyl-terminal hydrolase 6
Source gene:
USP6
Class:
DEG_APCC_KENBOX_2
Location:
1228:1232
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.8615
ASA_SCORE:
85.84
COIL:
0.7262
CONS_SCORE:
0.281
DSS_SCORE:
0.5498
HELIX:
0.2188
FCONS_SCORE:
1.0358
RIG_SCORE:
0.6286
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.A1233D
TCGA-AA-3984
COAD
TCGA
SKENG
DEG_APCC_KENBOX_2
0.3056
p.A1233D
DO9002
COAD
ICGC
SKENG
DEG_APCC_KENBOX_2
0.3056
p.A1227V
TCGA-AG-A002
READ
TCGA
SKENG
DEG_APCC_KENBOX_2
0.3056
p.K1223N
TCGA-AP-A056
UCEC
TCGA
SKENG
DEG_APCC_KENBOX_2
0.3056
p.K1223N
TCGA-AX-A05Z
UCEC
TCGA
SKENG
DEG_APCC_KENBOX_2
0.3056
p.K1223N
DO40884
UCEC
ICGC
SKENG
DEG_APCC_KENBOX_2
0.3056
p.K1223N
DO43971
UCEC
ICGC
SKENG
DEG_APCC_KENBOX_2
0.3056
p.G1232E
TCGA-DA-A3F8
SKCM
TCGA
SKENG
DEG_APCC_KENBOX_2
0.6087
p.G1232E
DO37418
SKCM
ICGC
SKENG
DEG_APCC_KENBOX_2
0.6087
p.C1237R
DO229259
THCA
ICGC
SKENG
DEG_APCC_KENBOX_2
0.1944
p.L1239Q
DO229211
THCA
ICGC
SKENG
DEG_APCC_KENBOX_2
0.1389
p.E1230D
DO229221
THCA
ICGC
SKENG
DEG_APCC_KENBOX_2
0.6758
p.E1230D
SIDM00193
Colorectal Carcinoma
GDSC
SKENG
DEG_APCC_KENBOX_2
0.6758
p.E1230D
ACH-000991
Colon/Colorectal Cancer
CCLE
SKENG
DEG_APCC_KENBOX_2
0.6758
p.E1230D
SNU-81
large_intestine
COSMIC
SKENG
DEG_APCC_KENBOX_2
0.6758
Drug responses associated with USP6 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of SKENG
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P35125
Ubiquitin carboxyl-terminal hydrolase 6
DEG_APCC_KENBOX_2
1228:1232
SKENG
APC,CDC20,FZR1
0.8615
More...
P35251
Replication factor C subunit 1
DEG_APCC_KENBOX_2
125:129
SKENG
APC,CDC20,FZR1
0.9622
More...
Q12908
Ileal sodium/bile acid cotransporter
DEG_APCC_KENBOX_2
325:329
SKENG
APC,CDC20,FZR1
0.6472
More...
Q13596
Sorting nexin-1
DEG_APCC_KENBOX_2
72:76
SKENG
APC,CDC20,FZR1
0.924
More...
Q8IX12
Cell division cycle and apoptosis regulator protein 1
DEG_APCC_KENBOX_2
1143:1147
SKENG
APC,CDC20,FZR1
0.9857
More...
Q8NFA0
Ubiquitin carboxyl-terminal hydrolase 32
DEG_APCC_KENBOX_2
1430:1434
SKENG
APC,CDC20,FZR1
0.9942
More...