DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
SKENG
Uniprot ID:
P35251
Source protein:
Replication factor C subunit 1
Source gene:
RFC1
Class:
DEG_APCC_KENBOX_2
Location:
125:129
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9622
ASA_SCORE:
102.58
COIL:
0.8696
CONS_SCORE:
0.2361
DSS_SCORE:
0.603
HELIX:
0.0738
FCONS_SCORE:
1.0204
RIG_SCORE:
0.5809
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.N133H
TCGA-AP-A1DV
UCEC
TCGA
SKENG
DEG_APCC_KENBOX_2
0.2222
p.N133H
DO43186
UCEC
ICGC
SKENG
DEG_APCC_KENBOX_2
0.2222
p.R130I
TCGA-B5-A0JY
UCEC
TCGA
SKENG
DEG_APCC_KENBOX_2
0.3056
p.R130I
DO43041
UCEC
ICGC
SKENG
DEG_APCC_KENBOX_2
0.3056
p.A121V
TCGA-B5-A3FC
UCEC
TCGA
SKENG
DEG_APCC_KENBOX_2
0.2222
p.A121V
DO41871
UCEC
ICGC
SKENG
DEG_APCC_KENBOX_2
0.2222
p.D115N
TCGA-D1-A160
UCEC
TCGA
SKENG
DEG_APCC_KENBOX_2
0.0556
p.D115N
DO41626
UCEC
ICGC
SKENG
DEG_APCC_KENBOX_2
0.0556
p.H135N
DO229022
LICA
ICGC
SKENG
DEG_APCC_KENBOX_2
0.1667
p.G129E
DO230538
LUSC
ICGC
SKENG
DEG_APCC_KENBOX_2
0.6087
p.N133D
DO229232
THCA
ICGC
SKENG
DEG_APCC_KENBOX_2
0.2222
Drug responses associated with RFC1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of SKENG
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P35125
Ubiquitin carboxyl-terminal hydrolase 6
DEG_APCC_KENBOX_2
1228:1232
SKENG
APC,CDC20,FZR1
0.8615
More...
P35251
Replication factor C subunit 1
DEG_APCC_KENBOX_2
125:129
SKENG
APC,CDC20,FZR1
0.9622
More...
Q12908
Ileal sodium/bile acid cotransporter
DEG_APCC_KENBOX_2
325:329
SKENG
APC,CDC20,FZR1
0.6472
More...
Q13596
Sorting nexin-1
DEG_APCC_KENBOX_2
72:76
SKENG
APC,CDC20,FZR1
0.924
More...
Q8IX12
Cell division cycle and apoptosis regulator protein 1
DEG_APCC_KENBOX_2
1143:1147
SKENG
APC,CDC20,FZR1
0.9857
More...
Q8NFA0
Ubiquitin carboxyl-terminal hydrolase 32
DEG_APCC_KENBOX_2
1430:1434
SKENG
APC,CDC20,FZR1
0.9942
More...