DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CGC
Degron:
SKENG
Uniprot ID:
Q13596
Source protein:
Sorting nexin-1
Source gene:
SNX1
Class:
DEG_APCC_KENBOX_2
Location:
72:76
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.924
ASA_SCORE:
90.14
COIL:
0.8452
CONS_SCORE:
0.305
DSS_SCORE:
0.6741
HELIX:
0.1098
FCONS_SCORE:
1.0173
RIG_SCORE:
0.6012
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.N69I
TCGA-AA-A010
COAD
TCGA
SKENG
DEG_APCC_KENBOX_2
0.25
p.L65I
TCGA-DA-A1IB
SKCM
TCGA
SKENG
DEG_APCC_KENBOX_2
0.1389
p.L65I
DO38033
SKCM
ICGC
SKENG
DEG_APCC_KENBOX_2
0.1389
p.P85Q
TCGA-EE-A3AG
SKCM
TCGA
SKENG
DEG_APCC_KENBOX_2
0.0833
p.P85Q
DO37471
SKCM
ICGC
SKENG
DEG_APCC_KENBOX_2
0.0833
p.Q86H
TCGA-IB-7651
PAAD
TCGA
SKENG
DEG_APCC_KENBOX_2
0.0556
p.Q86H
DO46657
PAAD
ICGC
SKENG
DEG_APCC_KENBOX_2
0.0556
p.P67L
DO232224
PBCA
ICGC
SKENG
DEG_APCC_KENBOX_2
0.1944
Drug responses associated with SNX1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of SKENG
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P35125
Ubiquitin carboxyl-terminal hydrolase 6
DEG_APCC_KENBOX_2
1228:1232
SKENG
APC,CDC20,FZR1
0.8615
More...
P35251
Replication factor C subunit 1
DEG_APCC_KENBOX_2
125:129
SKENG
APC,CDC20,FZR1
0.9622
More...
Q12908
Ileal sodium/bile acid cotransporter
DEG_APCC_KENBOX_2
325:329
SKENG
APC,CDC20,FZR1
0.6472
More...
Q13596
Sorting nexin-1
DEG_APCC_KENBOX_2
72:76
SKENG
APC,CDC20,FZR1
0.924
More...
Q8IX12
Cell division cycle and apoptosis regulator protein 1
DEG_APCC_KENBOX_2
1143:1147
SKENG
APC,CDC20,FZR1
0.9857
More...
Q8NFA0
Ubiquitin carboxyl-terminal hydrolase 32
DEG_APCC_KENBOX_2
1430:1434
SKENG
APC,CDC20,FZR1
0.9942
More...