DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
SKENI
Uniprot ID:
P13521
Source protein:
Secretogranin-2
Source gene:
SCG2
Class:
DEG_APCC_KENBOX_2
Location:
268:272
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.7451
ASA_SCORE:
104.12
COIL:
0.3328
CONS_SCORE:
0.7337
DSS_SCORE:
0.6491
HELIX:
0.6642
FCONS_SCORE:
1.1344
RIG_SCORE:
0.6928
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.Q262K
TCGA-86-8073
LUAD
TCGA
SKENI
DEG_APCC_KENBOX_2
0.1667
p.Q262K
DO23624
LUAD
ICGC
SKENI
DEG_APCC_KENBOX_2
0.1667
p.Q262K
DO230986
LUSC
ICGC
SKENI
DEG_APCC_KENBOX_2
0.1667
p.D280H
TCGA-86-8674
LUAD
TCGA
SKENI
DEG_APCC_KENBOX_2
0.1111
p.D280H
DO25535
LUAD
ICGC
SKENI
DEG_APCC_KENBOX_2
0.1111
p.K274Q
TCGA-AA-3984
COAD
TCGA
SKENI
DEG_APCC_KENBOX_2
0.2778
p.K274Q
DO9002
COAD
ICGC
SKENI
DEG_APCC_KENBOX_2
0.2778
p.E270D
TCGA-AG-A002
READ
TCGA
SKENI
DEG_APCC_KENBOX_2
0.6758
p.E270D
TCGA-B5-A0JY
UCEC
TCGA
SKENI
DEG_APCC_KENBOX_2
0.6758
p.E270D
TCGA-B5-A3FA
UCEC
TCGA
SKENI
DEG_APCC_KENBOX_2
0.6758
p.E270D
DO43041
UCEC
ICGC
SKENI
DEG_APCC_KENBOX_2
0.6758
p.E270D
DO52402
UCEC
ICGC
SKENI
DEG_APCC_KENBOX_2
0.6758
p.Q262H
TCGA-B5-A1MX
UCEC
TCGA
SKENI
DEG_APCC_KENBOX_2
0.1667
p.Q262H
DO41999
UCEC
ICGC
SKENI
DEG_APCC_KENBOX_2
0.1667
p.Q277E
TCGA-CG-5728
STAD
TCGA
SKENI
DEG_APCC_KENBOX_2
0.1944
p.Q277E
DO38619
STAD
ICGC
SKENI
DEG_APCC_KENBOX_2
0.1944
p.E263K
TCGA-EE-A29M
SKCM
TCGA
SKENI
DEG_APCC_KENBOX_2
0.1944
p.E263K
DO37404
SKCM
ICGC
SKENI
DEG_APCC_KENBOX_2
0.1944
p.Q277R
DO228592
LICA
ICGC
SKENI
DEG_APCC_KENBOX_2
0.1944
p.V265A
DO228138
PBCA
ICGC
SKENI
DEG_APCC_KENBOX_2
0.25
p.S268R
DO232224
PBCA
ICGC
SKENI
DEG_APCC_KENBOX_2
0.7427
p.D280N
DO229502
SKCA
ICGC
SKENI
DEG_APCC_KENBOX_2
0.1111
p.I278M
SIDM02014
Esophageal Carcinoma
GDSC
SKENI
DEG_APCC_KENBOX_2
0.1667
p.I272T
SIDM00845
Burkitt's Lymphoma
GDSC
SKENI
DEG_APCC_KENBOX_2
0.5966
p.S259T
SIDM00845
Burkitt's Lymphoma
GDSC
SKENI
DEG_APCC_KENBOX_2
0.0833
Drug responses associated with SCG2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of SKENI
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P13521
Secretogranin-2
DEG_APCC_KENBOX_2
268:272
SKENI
APC,CDC20,FZR1
0.7451
More...
P51955
Serine/threonine-protein kinase Nek2
DEG_APCC_KENBOX_2
390:394
SKENI
APC,CDC20,FZR1
0.9566
More...
Q9NQ76
Matrix extracellular phosphoglycoprotein
DEG_APCC_KENBOX_2
60:64
SKENI
APC,CDC20,FZR1
0.9125
More...
Q9NQX3
Gephyrin [Includes: Molybdopterin adenylyltransferase
DEG_APCC_KENBOX_2
295:299
SKENI
APC,CDC20,FZR1
0.8364
More...
Q9NSY1
BMP-2-inducible protein kinase
DEG_APCC_KENBOX_2
1041:1045
SKENI
APC,CDC20,FZR1
0.9065
More...
Q9NYB5
Solute carrier organic anion transporter family member 1C1
DEG_APCC_KENBOX_2
5:9
SKENI
APC,CDC20,FZR1
0.9756
More...