DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CGC
Degron:
SKENI
Uniprot ID:
Q9NQ76
Source protein:
Matrix extracellular phosphoglycoprotein
Source gene:
MEPE
Class:
DEG_APCC_KENBOX_2
Location:
60:64
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9125
ASA_SCORE:
94.24
COIL:
0.6144
CONS_SCORE:
0.3779
DSS_SCORE:
0.5262
HELIX:
0.373
FCONS_SCORE:
1.2138
RIG_SCORE:
0.711
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R53I
TCGA-BK-A6W3
UCEC
TCGA
SKENI
DEG_APCC_KENBOX_2
0.1389
p.S73F
TCGA-D3-A2JO
SKCM
TCGA
SKENI
DEG_APCC_KENBOX_2
0.0833
p.S73P
TCGA-DU-6392
LGG
TCGA
SKENI
DEG_APCC_KENBOX_2
0.0833
p.V65A
TCGA-FV-A496
LIHC
TCGA
SKENI
DEG_APCC_KENBOX_2
0.3056
p.Q56H
DO233950
GACA
ICGC
SKENI
DEG_APCC_KENBOX_2
0.2222
p.V50F
DO229015
LICA
ICGC
SKENI
DEG_APCC_KENBOX_2
0.0556
p.S60P
DO222420
MELA
ICGC
SKENI
DEG_APCC_KENBOX_2
0.5641
p.L51R
DO36556
READ
ICGC
SKENI
DEG_APCC_KENBOX_2
0.0833
p.P58R
SIDM00454
Rhabdomyosarcoma
GDSC
SKENI
DEG_APCC_KENBOX_2
0.2778
p.K73R
SIDM00706
Small Cell Lung Carcinoma
GDSC
SKENI
DEG_APCC_KENBOX_2
0.0833
p.K73R
NCI-H209
lung
COSMIC
SKENI
DEG_APCC_KENBOX_2
0.0833
p.M56T
SIDM00970
Bladder Carcinoma
GDSC
SKENI
DEG_APCC_KENBOX_2
0.2222
p.M56T
DSH1
urinary_tract
COSMIC
SKENI
DEG_APCC_KENBOX_2
0.2222
p.N72H
SIDM00118
Colorectal Carcinoma
GDSC
SKENI
DEG_APCC_KENBOX_2
0.1111
p.N72H
HCC2998
large_intestine
COSMIC
SKENI
DEG_APCC_KENBOX_2
0.1111
p.R68S
ACH-000614
Skin Cancer
CCLE
SKENI
DEG_APCC_KENBOX_2
0.2222
p.R68S
RVH-421
skin
COSMIC
SKENI
DEG_APCC_KENBOX_2
0.2222
p.R63S
ACH-000820
Colon/Colorectal Cancer
CCLE
SKENI
DEG_APCC_KENBOX_2
0.7427
p.R63S
SW403
large_intestine
COSMIC
SKENI
DEG_APCC_KENBOX_2
0.7427
p.Q56E
ACH-000840
Lung Cancer
CCLE
SKENI
DEG_APCC_KENBOX_2
0.2222
p.Q56E
HCC-366
lung
COSMIC
SKENI
DEG_APCC_KENBOX_2
0.2222
p.G51D
SNU-1040
large_intestine
COSMIC
SKENI
DEG_APCC_KENBOX_2
0.0833
p.G58R
SW684
soft_tissue
COSMIC
SKENI
DEG_APCC_KENBOX_2
0.2778
p.L51M
SNU-175
large_intestine
COSMIC
SKENI
DEG_APCC_KENBOX_2
0.0833
Drug responses associated with MEPE mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of SKENI
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P13521
Secretogranin-2
DEG_APCC_KENBOX_2
268:272
SKENI
APC,CDC20,FZR1
0.7451
More...
P51955
Serine/threonine-protein kinase Nek2
DEG_APCC_KENBOX_2
390:394
SKENI
APC,CDC20,FZR1
0.9566
More...
Q9NQ76
Matrix extracellular phosphoglycoprotein
DEG_APCC_KENBOX_2
60:64
SKENI
APC,CDC20,FZR1
0.9125
More...
Q9NQX3
Gephyrin [Includes: Molybdopterin adenylyltransferase
DEG_APCC_KENBOX_2
295:299
SKENI
APC,CDC20,FZR1
0.8364
More...
Q9NSY1
BMP-2-inducible protein kinase
DEG_APCC_KENBOX_2
1041:1045
SKENI
APC,CDC20,FZR1
0.9065
More...
Q9NYB5
Solute carrier organic anion transporter family member 1C1
DEG_APCC_KENBOX_2
5:9
SKENI
APC,CDC20,FZR1
0.9756
More...