DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
SKENI
Uniprot ID:
Q9NQX3
Source protein:
Gephyrin [Includes: Molybdopterin adenylyltransferase
Source gene:
GPHN
Class:
DEG_APCC_KENBOX_2
Location:
295:299
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.8364
ASA_SCORE:
92.62
COIL:
0.4258
CONS_SCORE:
0.1881
DSS_SCORE:
0.4799
HELIX:
0.5658
FCONS_SCORE:
0.9727
RIG_SCORE:
0.6992
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S297T
TCGA-23-1032
OV
TCGA
SKENI
DEG_APCC_KENBOX_2
0.7116
p.S297T
DO32267
OV
ICGC
SKENI
DEG_APCC_KENBOX_2
0.7116
p.P304S
TCGA-A5-A1OF
UCEC
TCGA
SKENI
DEG_APCC_KENBOX_2
0.1944
p.S303L
TCGA-BR-4201
STAD
TCGA
SKENI
DEG_APCC_KENBOX_2
0.6667
p.S303L
DO38707
STAD
ICGC
SKENI
DEG_APCC_KENBOX_2
0.6667
p.D292H
TCGA-BR-7716
STAD
TCGA
SKENI
DEG_APCC_KENBOX_2
0.25
p.D292H
DO38675
STAD
ICGC
SKENI
DEG_APCC_KENBOX_2
0.25
p.P300L
TCGA-FI-A2D0
UCEC
TCGA
SKENI
DEG_APCC_KENBOX_2
0.3056
p.P300L
SIDM00545
Melanoma
GDSC
SKENI
DEG_APCC_KENBOX_2
0.3056
p.P300L
ACH-000987
Skin Cancer
CCLE
SKENI
DEG_APCC_KENBOX_2
0.3056
p.P300L
Mewo
skin
COSMIC
SKENI
DEG_APCC_KENBOX_2
0.3056
p.R291Q
TCGA-GN-A263
SKCM
TCGA
SKENI
DEG_APCC_KENBOX_2
0.6667
p.R291Q
DO37766
SKCM
ICGC
SKENI
DEG_APCC_KENBOX_2
0.6667
p.S297C
TCGA-WE-A8ZR
SKCM
TCGA
SKENI
DEG_APCC_KENBOX_2
0.7541
p.M305I
DO51927
BLCA
ICGC
SKENI
DEG_APCC_KENBOX_2
0.6111
p.T306S
DO228353
MALY
ICGC
SKENI
DEG_APCC_KENBOX_2
0.1389
p.R291L
DO46420
OV
ICGC
SKENI
DEG_APCC_KENBOX_2
0.6667
p.P291S
DO229446
SKCA
ICGC
SKENI
DEG_APCC_KENBOX_2
0.6667
p.P300S
DO218849
SKCA
ICGC
SKENI
DEG_APCC_KENBOX_2
0.3056
p.P307L
DO52402
UCEC
ICGC
SKENI
DEG_APCC_KENBOX_2
0.1111
p.S288Y
DO43971
UCEC
ICGC
SKENI
DEG_APCC_KENBOX_2
0.25
p.A294V
SIDM02021
Esophageal Carcinoma
GDSC
SKENI
DEG_APCC_KENBOX_2
0.75
p.Q307H
SIDM00721
Small Cell Lung Carcinoma
GDSC
SKENI
DEG_APCC_KENBOX_2
0.1111
p.Q307H
ACH-002171
Lung Cancer
CCLE
SKENI
DEG_APCC_KENBOX_2
0.1111
p.Q307H
NCI-H250
lung
COSMIC
SKENI
DEG_APCC_KENBOX_2
0.1111
p.A294T
ACH-001735
Leukemia
CCLE
SKENI
DEG_APCC_KENBOX_2
0.75
p.Q289H
NCI-H250
lung
COSMIC
SKENI
DEG_APCC_KENBOX_2
0.1667
p.Q287H
NCI-H250
lung
COSMIC
SKENI
DEG_APCC_KENBOX_2
0.1111
p.I309V
CW-2
large_intestine
COSMIC
SKENI
DEG_APCC_KENBOX_2
0.0556
Drug responses associated with GPHN mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of SKENI
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P13521
Secretogranin-2
DEG_APCC_KENBOX_2
268:272
SKENI
APC,CDC20,FZR1
0.7451
More...
P51955
Serine/threonine-protein kinase Nek2
DEG_APCC_KENBOX_2
390:394
SKENI
APC,CDC20,FZR1
0.9566
More...
Q9NQ76
Matrix extracellular phosphoglycoprotein
DEG_APCC_KENBOX_2
60:64
SKENI
APC,CDC20,FZR1
0.9125
More...
Q9NQX3
Gephyrin [Includes: Molybdopterin adenylyltransferase
DEG_APCC_KENBOX_2
295:299
SKENI
APC,CDC20,FZR1
0.8364
More...
Q9NSY1
BMP-2-inducible protein kinase
DEG_APCC_KENBOX_2
1041:1045
SKENI
APC,CDC20,FZR1
0.9065
More...
Q9NYB5
Solute carrier organic anion transporter family member 1C1
DEG_APCC_KENBOX_2
5:9
SKENI
APC,CDC20,FZR1
0.9756
More...