DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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CGC
Degron:
SKENI
Uniprot ID:
P51955
Source protein:
Serine/threonine-protein kinase Nek2
Source gene:
NEK2
Class:
DEG_APCC_KENBOX_2
Location:
390:394
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9566
ASA_SCORE:
102.26
COIL:
0.5106
CONS_SCORE:
0.3893
DSS_SCORE:
0.5044
HELIX:
0.4688
FCONS_SCORE:
1.0732
RIG_SCORE:
0.6831
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.G388E
TCGA-05-4250
LUAD
TCGA
SKENI
DEG_APCC_KENBOX_2
0.2778
p.G388R
TCGA-06-6389
GBM
TCGA
SKENI
DEG_APCC_KENBOX_2
0.2778
p.S402G
TCGA-A3-A6NN
KIRC
TCGA
SKENI
DEG_APCC_KENBOX_2
0.5556
p.S385P
DO232761
PBCA
ICGC
SKENI
DEG_APCC_KENBOX_2
0.1944
p.Q392K
DO37405
SKCM
ICGC
SKENI
DEG_APCC_KENBOX_2
0.6944
p.R380L
DO47407
SKCM
ICGC
SKENI
DEG_APCC_KENBOX_2
0.0556
p.W381L
DO229208
THCA
ICGC
SKENI
DEG_APCC_KENBOX_2
0.5278
p.N390K
DO43626
UCEC
ICGC
SKENI
DEG_APCC_KENBOX_2
0.6918
p.R380Q
DO41704
UCEC
ICGC
SKENI
DEG_APCC_KENBOX_2
0.0556
p.Q403P
SIDM02021
Esophageal Carcinoma
GDSC
SKENI
DEG_APCC_KENBOX_2
0.0833
p.S387N
SIDM00422
Hodgkin's Lymphoma
GDSC
SKENI
DEG_APCC_KENBOX_2
0.25
p.S387N
ACH-001203
Lymphoma
CCLE
SKENI
DEG_APCC_KENBOX_2
0.25
p.S387N
SUP-HD1
haematopoietic_and_lymphoid_tissue
COSMIC
SKENI
DEG_APCC_KENBOX_2
0.25
p.N393K
SIDM01039
Other Solid Cancers
GDSC
SKENI
DEG_APCC_KENBOX_2
0.6918
p.N393K
ACH-001529
Endometrial/Uterine Cancer
CCLE
SKENI
DEG_APCC_KENBOX_2
0.6918
p.N393K
JAR
placenta
COSMIC
SKENI
DEG_APCC_KENBOX_2
0.6918
Drug responses associated with NEK2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of SKENI
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P13521
Secretogranin-2
DEG_APCC_KENBOX_2
268:272
SKENI
APC,CDC20,FZR1
0.7451
More...
P51955
Serine/threonine-protein kinase Nek2
DEG_APCC_KENBOX_2
390:394
SKENI
APC,CDC20,FZR1
0.9566
More...
Q9NQ76
Matrix extracellular phosphoglycoprotein
DEG_APCC_KENBOX_2
60:64
SKENI
APC,CDC20,FZR1
0.9125
More...
Q9NQX3
Gephyrin [Includes: Molybdopterin adenylyltransferase
DEG_APCC_KENBOX_2
295:299
SKENI
APC,CDC20,FZR1
0.8364
More...
Q9NSY1
BMP-2-inducible protein kinase
DEG_APCC_KENBOX_2
1041:1045
SKENI
APC,CDC20,FZR1
0.9065
More...
Q9NYB5
Solute carrier organic anion transporter family member 1C1
DEG_APCC_KENBOX_2
5:9
SKENI
APC,CDC20,FZR1
0.9756
More...