DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
VFSTS
Uniprot ID:
P31274
Source protein:
Homeobox protein Hox-C9
Source gene:
HOXC9
Class:
DEG_SPOP_SBC_1
Location:
61:65
E3 ligase:
SPOP
DEGRON score:
0.5518
ASA_SCORE:
52.3
COIL:
0.8344
CONS_SCORE:
0.7227
DSS_SCORE:
0.2493
HELIX:
0.0538
FCONS_SCORE:
1.044
RIG_SCORE:
0.7368
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.A67T
TCGA-05-4420
LUAD
TCGA
VFSTS
DEG_SPOP_SBC_1
0.2778
p.A67T
DO24675
LUAD
ICGC
VFSTS
DEG_SPOP_SBC_1
0.2778
p.A56T
TCGA-AJ-A3BD
UCEC
TCGA
VFSTS
DEG_SPOP_SBC_1
0.1944
p.A56T
TCGA-DF-A2KU
UCEC
TCGA
VFSTS
DEG_SPOP_SBC_1
0.1944
p.A56T
DO40813
UCEC
ICGC
VFSTS
DEG_SPOP_SBC_1
0.1944
p.A56T
DO223286
UCEC
ICGC
VFSTS
DEG_SPOP_SBC_1
0.1944
p.P51L
TCGA-AX-A0J1
UCEC
TCGA
VFSTS
DEG_SPOP_SBC_1
0.0556
p.P51L
DO41199
UCEC
ICGC
VFSTS
DEG_SPOP_SBC_1
0.0556
p.S73L
TCGA-AX-A2HC
UCEC
TCGA
VFSTS
DEG_SPOP_SBC_1
0.1111
p.S73L
DO41572
UCEC
ICGC
VFSTS
DEG_SPOP_SBC_1
0.1111
p.A56V
TCGA-BR-4363
STAD
TCGA
VFSTS
DEG_SPOP_SBC_1
0.1944
p.A56V
DO38815
STAD
ICGC
VFSTS
DEG_SPOP_SBC_1
0.1944
p.P57L
TCGA-IB-7651
PAAD
TCGA
VFSTS
DEG_SPOP_SBC_1
0.2222
p.P57L
DO46657
PAAD
ICGC
VFSTS
DEG_SPOP_SBC_1
0.2222
p.A67V
TCGA-L5-A8NM
ESCA
TCGA
VFSTS
DEG_SPOP_SBC_1
0.2778
p.A67V
SIDM00839
Colorectal Carcinoma
GDSC
VFSTS
DEG_SPOP_SBC_1
0.2778
p.A67V
ACH-000950
Colon/Colorectal Cancer
CCLE
VFSTS
DEG_SPOP_SBC_1
0.2778
p.A67V
LoVo
large_intestine
COSMIC
VFSTS
DEG_SPOP_SBC_1
0.2778
p.T64M
DO233205
GACA
ICGC
VFSTS
DEG_SPOP_SBC_1
0.7423
p.V75M
DO233772
GACA
ICGC
VFSTS
DEG_SPOP_SBC_1
0.0556
p.F62L
ACH-000975
Lung Cancer
CCLE
VFSTS
DEG_SPOP_SBC_1
0.587
Drug responses associated with HOXC9 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VFSTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P31274
Homeobox protein Hox-C9
DEG_SPOP_SBC_1
61:65
VFSTS
SPOP
0.5518
More...
Q12923
Tyrosine-protein phosphatase non-receptor type 13
DEG_SPOP_SBC_1
411:415
VFSTS
SPOP
0.5201
More...
Q5JUK3
Potassium channel subfamily T member 1
DEG_SPOP_SBC_1
1028:1032
VFSTS
SPOP
0.9188
More...
Q7LBC6
Lysine-specific demethylase 3B
DEG_SPOP_SBC_1
1318:1322
VFSTS
SPOP
0.9967
More...
Q99594
Transcriptional enhancer factor TEF-5
DEG_SPOP_SBC_1
154:158
VFSTS
SPOP
0.9993
More...
Q9UMZ2
Synergin gamma
DEG_SPOP_SBC_1
636:640
VFSTS
SPOP
0.9936
More...