DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
VFSTS
Uniprot ID:
Q7LBC6
Source protein:
Lysine-specific demethylase 3B
Source gene:
KDM3B
Class:
DEG_SPOP_SBC_1
Location:
1318:1322
E3 ligase:
SPOP
DEGRON score:
0.9967
ASA_SCORE:
75.82
COIL:
0.812
CONS_SCORE:
0.4684
DSS_SCORE:
0.3799
HELIX:
0.066
FCONS_SCORE:
0.9479
RIG_SCORE:
0.7413
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.A1324P
TCGA-CK-4951
COAD
TCGA
VFSTS
DEG_SPOP_SBC_1
0.2778
p.K1327N
TCGA-D8-A1JA
BRCA
TCGA
VFSTS
DEG_SPOP_SBC_1
0.6389
p.S1322F
TCGA-DA-A960
SKCM
TCGA
VFSTS
DEG_SPOP_SBC_1
0.7982
p.P1314L
TCGA-EE-A3AG
SKCM
TCGA
VFSTS
DEG_SPOP_SBC_1
0.2222
p.R1315H
DO5242
BRCA
ICGC
VFSTS
DEG_SPOP_SBC_1
0.25
p.R1315H
DO44442
HNSC
ICGC
VFSTS
DEG_SPOP_SBC_1
0.25
p.Y1319C
DO20841
KIRP
ICGC
VFSTS
DEG_SPOP_SBC_1
0.7087
p.Q1331H
DO44832
LICA
ICGC
VFSTS
DEG_SPOP_SBC_1
0.5278
p.R1315C
DO222557
MELA
ICGC
VFSTS
DEG_SPOP_SBC_1
0.25
p.G1323V
DO37742
SKCM
ICGC
VFSTS
DEG_SPOP_SBC_1
0.3056
p.T1321A
SIDM00455
Pancreatic Carcinoma
GDSC
VFSTS
DEG_SPOP_SBC_1
0.7139
p.T1321A
ACH-000599
Pancreatic Cancer
CCLE
VFSTS
DEG_SPOP_SBC_1
0.7139
p.T1321A
PA-TU-8902
pancreas
COSMIC
VFSTS
DEG_SPOP_SBC_1
0.7139
p.P1316L
SIDM00458
Acute Myeloid Leukemia
GDSC
VFSTS
DEG_SPOP_SBC_1
0.2778
p.P1316L
ACH-000751
Leukemia
CCLE
VFSTS
DEG_SPOP_SBC_1
0.2778
p.P1316L
OCI-M1
haematopoietic_and_lymphoid_tissue
COSMIC
VFSTS
DEG_SPOP_SBC_1
0.2778
Drug responses associated with KDM3B mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VFSTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P31274
Homeobox protein Hox-C9
DEG_SPOP_SBC_1
61:65
VFSTS
SPOP
0.5518
More...
Q12923
Tyrosine-protein phosphatase non-receptor type 13
DEG_SPOP_SBC_1
411:415
VFSTS
SPOP
0.5201
More...
Q5JUK3
Potassium channel subfamily T member 1
DEG_SPOP_SBC_1
1028:1032
VFSTS
SPOP
0.9188
More...
Q7LBC6
Lysine-specific demethylase 3B
DEG_SPOP_SBC_1
1318:1322
VFSTS
SPOP
0.9967
More...
Q99594
Transcriptional enhancer factor TEF-5
DEG_SPOP_SBC_1
154:158
VFSTS
SPOP
0.9993
More...
Q9UMZ2
Synergin gamma
DEG_SPOP_SBC_1
636:640
VFSTS
SPOP
0.9936
More...