DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
VGSTS
Uniprot ID:
Q99640
Source protein:
Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase
Source gene:
PKMYT1
Class:
DEG_SPOP_SBC_1
Location:
450:454
E3 ligase:
SPOP
DEGRON score:
0.9993
ASA_SCORE:
76.98
COIL:
0.9484
CONS_SCORE:
0.3619
DSS_SCORE:
0.5364
HELIX:
0.0284
FCONS_SCORE:
0.8819
RIG_SCORE:
0.6242
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R459S
TCGA-A5-A0G1
UCEC
TCGA
VGSTS
DEG_SPOP_SBC_1
0.1944
p.L459I
DO229034
LICA
ICGC
VGSTS
DEG_SPOP_SBC_1
0.1944
p.H440N
DO229036
LICA
ICGC
VGSTS
DEG_SPOP_SBC_1
0.0556
p.H440N
DO229045
LICA
ICGC
VGSTS
DEG_SPOP_SBC_1
0.0556
p.S445F
DO220898
MELA
ICGC
VGSTS
DEG_SPOP_SBC_1
0.1944
p.A456V
DO38201
STAD
ICGC
VGSTS
DEG_SPOP_SBC_1
0.2778
p.A456D
DO41674
UCEC
ICGC
VGSTS
DEG_SPOP_SBC_1
0.2778
p.R450S
DO42472
UCEC
ICGC
VGSTS
DEG_SPOP_SBC_1
0.7427
p.P442H
KM12
large_intestine
COSMIC
VGSTS
DEG_SPOP_SBC_1
0.1111
Drug responses associated with PKMYT1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VGSTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q15637
Splicing factor 1
DEG_SPOP_SBC_1
329:333
VGSTS
SPOP
0.9983
More...
Q86SJ6
Desmoglein-4
DEG_SPOP_SBC_1
1017:1021
VGSTS
SPOP
0.9979
More...
Q99569
Plakophilin-4
DEG_SPOP_SBC_1
1043:1047
VGSTS
SPOP
0.9894
More...
Q99640
Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase
DEG_SPOP_SBC_1
450:454
VGSTS
SPOP
0.9993
More...
Q8NI99
Angiopoietin-related protein 6
DEG_SPOP_SBC_1
210:214
VGSTS
SPOP
0.5427
More...
Q5T8I3
Protein FAM102B
DEG_SPOP_SBC_1
240:244
VGSTS
SPOP
0.9943
More...