DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
VHTST
Uniprot ID:
Q9UGC7
Source protein:
Peptide chain release factor 1-like, mitochondrial
Source gene:
MTRF1L
Class:
DEG_SPOP_SBC_1
Location:
214:218
E3 ligase:
SPOP
DEGRON score:
0.8151
ASA_SCORE:
31.86
COIL:
0.2578
CONS_SCORE:
0.7459
DSS_SCORE:
0.5335
HELIX:
0.0086
FCONS_SCORE:
1.2116
RIG_SCORE:
0.763
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R213H
TCGA-BR-8487
STAD
TCGA
VHTST
DEG_SPOP_SBC_1
0.3056
p.R213H
DO234462
ESAD
ICGC
VHTST
DEG_SPOP_SBC_1
0.3056
p.R213H
DO47867
STAD
ICGC
VHTST
DEG_SPOP_SBC_1
0.3056
p.R213H
ACH-000533
Rhabdoid
CCLE
VHTST
DEG_SPOP_SBC_1
0.3056
p.T228A
TCGA-CG-5721
STAD
TCGA
VHTST
DEG_SPOP_SBC_1
0.5
p.T228A
DO38192
STAD
ICGC
VHTST
DEG_SPOP_SBC_1
0.5
p.K207N
TCGA-P4-A5EA
KIRP
TCGA
VHTST
DEG_SPOP_SBC_1
0.25
p.K207N
DO48582
KIRP
ICGC
VHTST
DEG_SPOP_SBC_1
0.25
p.V214I
DO229003
COCA
ICGC
VHTST
DEG_SPOP_SBC_1
0.7076
p.V214I
DO229005
COCA
ICGC
VHTST
DEG_SPOP_SBC_1
0.7076
p.V214I
DO228941
LICA
ICGC
VHTST
DEG_SPOP_SBC_1
0.7076
p.V214I
DO231049
LUSC
ICGC
VHTST
DEG_SPOP_SBC_1
0.7076
p.P225T
DO229026
LICA
ICGC
VHTST
DEG_SPOP_SBC_1
0.1389
p.V205M
DO50712
ORCA
ICGC
VHTST
DEG_SPOP_SBC_1
0.0833
p.P225H
ACH-001369
Ovarian Cancer
CCLE
VHTST
DEG_SPOP_SBC_1
0.1389
Drug responses associated with MTRF1L mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VHTST
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q03164
Histone-lysine N-methyltransferase 2A
DEG_SPOP_SBC_1
2810:2814
VHTST
SPOP
0.9894
More...
Q5H9I0
Transcription factor Dp family member 3
DEG_SPOP_SBC_1
29:33
VHTST
SPOP
0.9844
More...
Q9H582
Zinc finger protein 644
DEG_SPOP_SBC_1
377:381
VHTST
SPOP
0.9983
More...
Q9HC84
Mucin-5B
DEG_SPOP_SBC_1
2574:2578
VHTST
SPOP
0.8934
More...
Q9HC84
Mucin-5B
DEG_SPOP_SBC_1
3274:3278
VHTST
SPOP
0.9074
More...
Q9HC84
Mucin-5B
DEG_SPOP_SBC_1
4559:4563
VHTST
SPOP
0.9602
More...
Q9UGC7
Peptide chain release factor 1-like, mitochondrial
DEG_SPOP_SBC_1
214:218
VHTST
SPOP
0.8151
More...