DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
VISSS
Uniprot ID:
P28702
Source protein:
Retinoic acid receptor RXR-beta
Source gene:
RXRB
Class:
DEG_SPOP_SBC_1
Location:
135:139
E3 ligase:
SPOP
DEGRON score:
0.988
ASA_SCORE:
53.66
COIL:
0.7558
CONS_SCORE:
0.5747
DSS_SCORE:
0.6071
HELIX:
0.0512
FCONS_SCORE:
0.8837
RIG_SCORE:
0.5944
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S144C
DO48413
BLCA
ICGC
VISSS
DEG_SPOP_SBC_1
0.1944
p.R135C
DO617
BLCA
ICGC
VISSS
DEG_SPOP_SBC_1
0.8301
p.I149S
DO6320
CESC
ICGC
VISSS
DEG_SPOP_SBC_1
0.0556
p.G128V
DO23038
LIHC
ICGC
VISSS
DEG_SPOP_SBC_1
0.1389
p.R138H
DO219410
PRAD
ICGC
VISSS
DEG_SPOP_SBC_1
0.8244
p.D140Y
DO36394
READ
ICGC
VISSS
DEG_SPOP_SBC_1
0.3056
p.R138S
DO37539
SKCM
ICGC
VISSS
DEG_SPOP_SBC_1
0.7427
p.K130N
DO47386
SKCM
ICGC
VISSS
DEG_SPOP_SBC_1
0.1944
p.P146L
DO229195
THCA
ICGC
VISSS
DEG_SPOP_SBC_1
0.1389
p.F132S
DO41584
UCEC
ICGC
VISSS
DEG_SPOP_SBC_1
0.25
p.P143T
JHOS-2
ovary
COSMIC
VISSS
DEG_SPOP_SBC_1
0.2222
Drug responses associated with RXRB mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VISSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P28702
Retinoic acid receptor RXR-beta
DEG_SPOP_SBC_1
135:139
VISSS
SPOP
0.988
More...
P29590
Protein PML
DEG_SPOP_SBC_1
558:562
VISSS
SPOP
0.999
More...
Q7RTS7
Keratin, type II cytoskeletal 74
DEG_SPOP_SBC_1
465:469
VISSS
SPOP
0.5653
More...
Q86XQ3
Cation channel sperm-associated protein 3
DEG_SPOP_SBC_1
12:16
VISSS
SPOP
0.6073
More...
O95625
Zinc finger and BTB domain-containing protein 11
DEG_SPOP_SBC_1
446:450
VISSS
SPOP
0.9985
More...
Q8N128
Protein FAM177A1
DEG_SPOP_SBC_1
182:186
VISSS
SPOP
0.9894
More...
Q8TF20
Zinc finger protein 721
DEG_SPOP_SBC_1
245:249
VISSS
SPOP
0.7681
More...